Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1052

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1051 and DvMF_1052 are separated by 327 nucleotidesDvMF_1052 and DvMF_1053 are separated by 281 nucleotides DvMF_1051: DvMF_1051 - TPR repeat-containing protein (RefSeq), at 1,283,869 to 1,284,516 _1051 DvMF_1052: DvMF_1052 - multi-sensor hybrid histidine kinase (RefSeq), at 1,284,844 to 1,289,943 _1052 DvMF_1053: DvMF_1053 - transcriptional regulator, TetR family (RefSeq), at 1,290,225 to 1,290,806 _1053 Position (kb) 1284 1285 1286 1287 1288 1289 1290Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1284.126 kb on + strand, within DvMF_1051at 1284.322 kb on - strand, within DvMF_1051at 1284.533 kb on + strandat 1284.533 kb on + strandat 1284.533 kb on + strandat 1284.541 kb on - strandat 1284.541 kb on - strandat 1285.185 kb on + strandat 1285.221 kb on + strandat 1285.229 kb on - strandat 1285.284 kb on - strandat 1285.406 kb on + strand, within DvMF_1052at 1285.423 kb on - strand, within DvMF_1052at 1285.434 kb on + strand, within DvMF_1052at 1285.466 kb on + strand, within DvMF_1052at 1285.509 kb on + strand, within DvMF_1052at 1285.608 kb on - strand, within DvMF_1052at 1285.663 kb on + strand, within DvMF_1052at 1285.723 kb on + strand, within DvMF_1052at 1285.742 kb on + strand, within DvMF_1052at 1285.748 kb on + strand, within DvMF_1052at 1285.762 kb on - strand, within DvMF_1052at 1285.819 kb on + strand, within DvMF_1052at 1285.980 kb on - strand, within DvMF_1052at 1286.026 kb on + strand, within DvMF_1052at 1286.185 kb on - strand, within DvMF_1052at 1286.258 kb on - strand, within DvMF_1052at 1286.401 kb on + strand, within DvMF_1052at 1286.818 kb on + strand, within DvMF_1052at 1286.958 kb on - strand, within DvMF_1052at 1286.973 kb on + strand, within DvMF_1052at 1287.691 kb on - strand, within DvMF_1052at 1287.834 kb on - strand, within DvMF_1052at 1287.852 kb on - strand, within DvMF_1052at 1288.164 kb on - strand, within DvMF_1052at 1288.404 kb on - strand, within DvMF_1052at 1288.531 kb on + strand, within DvMF_1052at 1288.580 kb on + strand, within DvMF_1052at 1288.746 kb on + strand, within DvMF_1052at 1288.917 kb on - strand, within DvMF_1052at 1289.025 kb on - strand, within DvMF_1052at 1289.132 kb on + strand, within DvMF_1052at 1289.181 kb on - strand, within DvMF_1052at 1289.777 kb on + strandat 1289.809 kb on - strandat 1290.060 kb on + strandat 1290.113 kb on - strandat 1290.684 kb on + strand, within DvMF_1053

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,284,126 + DvMF_1051 0.40 -0.6
1,284,322 - DvMF_1051 0.70 -0.8
1,284,533 + +0.0
1,284,533 + -1.9
1,284,533 + -0.5
1,284,541 - -0.3
1,284,541 - -0.2
1,285,185 + -3.2
1,285,221 + -3.9
1,285,229 - -4.7
1,285,284 - -3.2
1,285,406 + DvMF_1052 0.11 -7.2
1,285,423 - DvMF_1052 0.11 -4.8
1,285,434 + DvMF_1052 0.12 -4.8
1,285,466 + DvMF_1052 0.12 -3.7
1,285,509 + DvMF_1052 0.13 -4.9
1,285,608 - DvMF_1052 0.15 -3.8
1,285,663 + DvMF_1052 0.16 -4.7
1,285,723 + DvMF_1052 0.17 -5.0
1,285,742 + DvMF_1052 0.18 -4.4
1,285,748 + DvMF_1052 0.18 -6.2
1,285,762 - DvMF_1052 0.18 -2.9
1,285,819 + DvMF_1052 0.19 -6.6
1,285,980 - DvMF_1052 0.22 -4.8
1,286,026 + DvMF_1052 0.23 -3.5
1,286,185 - DvMF_1052 0.26 -4.7
1,286,258 - DvMF_1052 0.28 -4.1
1,286,401 + DvMF_1052 0.31 -3.8
1,286,818 + DvMF_1052 0.39 -4.7
1,286,958 - DvMF_1052 0.41 -2.7
1,286,973 + DvMF_1052 0.42 -5.4
1,287,691 - DvMF_1052 0.56 -2.6
1,287,834 - DvMF_1052 0.59 -3.1
1,287,852 - DvMF_1052 0.59 -4.1
1,288,164 - DvMF_1052 0.65 -5.3
1,288,404 - DvMF_1052 0.70 -4.6
1,288,531 + DvMF_1052 0.72 -5.8
1,288,580 + DvMF_1052 0.73 -5.1
1,288,746 + DvMF_1052 0.77 -5.5
1,288,917 - DvMF_1052 0.80 -5.5
1,289,025 - DvMF_1052 0.82 -5.0
1,289,132 + DvMF_1052 0.84 -3.7
1,289,181 - DvMF_1052 0.85 -4.1
1,289,777 + -4.6
1,289,809 - -3.1
1,290,060 + +0.7
1,290,113 - -0.4
1,290,684 + DvMF_1053 0.79 -0.4

Or see this region's nucleotide sequence