Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1015

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1014 and DvMF_1015 are separated by 356 nucleotidesDvMF_1015 and DvMF_1016 are separated by 2 nucleotidesDvMF_1016 and DvMF_1017 are separated by 121 nucleotidesDvMF_1017 and DvMF_1018 are separated by 37 nucleotides DvMF_1014: DvMF_1014 - diguanylate cyclase (RefSeq), at 1,229,596 to 1,231,254 _1014 DvMF_1015: DvMF_1015 - ferrous iron transport protein B (RefSeq), at 1,231,611 to 1,233,890 _1015 DvMF_1016: DvMF_1016 - FeoA family protein (RefSeq), at 1,233,893 to 1,234,150 _1016 DvMF_1017: DvMF_1017 - hypothetical protein (RefSeq), at 1,234,272 to 1,234,478 _1017 DvMF_1018: DvMF_1018 - FeoA family protein (RefSeq), at 1,234,516 to 1,234,764 _1018 Position (kb) 1231 1232 1233 1234Strain fitness (log2 ratio) -3 -2 -1 0 1at 1230.745 kb on - strand, within DvMF_1014at 1230.774 kb on + strand, within DvMF_1014at 1231.011 kb on + strand, within DvMF_1014at 1231.019 kb on - strand, within DvMF_1014at 1231.019 kb on - strand, within DvMF_1014at 1231.140 kb on + strandat 1231.140 kb on + strandat 1231.391 kb on - strandat 1231.405 kb on + strandat 1231.615 kb on + strandat 1234.292 kb on - strandat 1234.294 kb on - strand, within DvMF_1017at 1234.423 kb on + strand, within DvMF_1017at 1234.490 kb on - strandat 1234.545 kb on - strand, within DvMF_1018at 1234.639 kb on + strand, within DvMF_1018

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,230,745 - DvMF_1014 0.69 -0.5
1,230,774 + DvMF_1014 0.71 -0.7
1,231,011 + DvMF_1014 0.85 -1.3
1,231,019 - DvMF_1014 0.86 -1.3
1,231,019 - DvMF_1014 0.86 -0.8
1,231,140 + -1.2
1,231,140 + +0.3
1,231,391 - -1.2
1,231,405 + -0.7
1,231,615 + -1.8
1,234,292 - -0.8
1,234,294 - DvMF_1017 0.11 +0.3
1,234,423 + DvMF_1017 0.73 -2.3
1,234,490 - -3.1
1,234,545 - DvMF_1018 0.12 -1.1
1,234,639 + DvMF_1018 0.49 -1.2

Or see this region's nucleotide sequence