Experiment: MoYLS4 with Bacitracin 1.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1014 and DvMF_1015 are separated by 356 nucleotides DvMF_1015 and DvMF_1016 are separated by 2 nucleotides DvMF_1016 and DvMF_1017 are separated by 121 nucleotides DvMF_1017 and DvMF_1018 are separated by 37 nucleotides
DvMF_1014: DvMF_1014 - diguanylate cyclase (RefSeq), at 1,229,596 to 1,231,254
_1014
DvMF_1015: DvMF_1015 - ferrous iron transport protein B (RefSeq), at 1,231,611 to 1,233,890
_1015
DvMF_1016: DvMF_1016 - FeoA family protein (RefSeq), at 1,233,893 to 1,234,150
_1016
DvMF_1017: DvMF_1017 - hypothetical protein (RefSeq), at 1,234,272 to 1,234,478
_1017
DvMF_1018: DvMF_1018 - FeoA family protein (RefSeq), at 1,234,516 to 1,234,764
_1018
Position (kb)
1231
1232
1233
1234 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1230.745 kb on - strand, within DvMF_1014 at 1230.774 kb on + strand, within DvMF_1014 at 1231.011 kb on + strand, within DvMF_1014 at 1231.019 kb on - strand, within DvMF_1014 at 1231.019 kb on - strand, within DvMF_1014 at 1231.140 kb on + strand at 1231.140 kb on + strand at 1231.391 kb on - strand at 1231.405 kb on + strand at 1231.615 kb on + strand at 1234.292 kb on - strand at 1234.294 kb on - strand, within DvMF_1017 at 1234.423 kb on + strand, within DvMF_1017 at 1234.490 kb on - strand at 1234.545 kb on - strand, within DvMF_1018 at 1234.639 kb on + strand, within DvMF_1018
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml remove 1,230,745 - DvMF_1014 0.69 -0.5 1,230,774 + DvMF_1014 0.71 -0.7 1,231,011 + DvMF_1014 0.85 -1.3 1,231,019 - DvMF_1014 0.86 -1.3 1,231,019 - DvMF_1014 0.86 -0.8 1,231,140 + -1.2 1,231,140 + +0.3 1,231,391 - -1.2 1,231,405 + -0.7 1,231,615 + -1.8 1,234,292 - -0.8 1,234,294 - DvMF_1017 0.11 +0.3 1,234,423 + DvMF_1017 0.73 -2.3 1,234,490 - -3.1 1,234,545 - DvMF_1018 0.12 -1.1 1,234,639 + DvMF_1018 0.49 -1.2
Or see this region's nucleotide sequence