Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0976

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpgk and DvMF_0976 are separated by 372 nucleotidesDvMF_0976 and DvMF_0977 are separated by 426 nucleotides DvMF_0975: pgk - phosphoglycerate kinase (RefSeq), at 1,180,904 to 1,182,085 pgk DvMF_0976: DvMF_0976 - transketolase (RefSeq), at 1,182,458 to 1,184,452 _0976 DvMF_0977: DvMF_0977 - Ribulose-phosphate 3-epimerase (RefSeq), at 1,184,879 to 1,185,538 _0977 Position (kb) 1182 1183 1184 1185Strain fitness (log2 ratio) -1 0 1at 1182.094 kb on - strandat 1182.414 kb on + strandat 1182.414 kb on + strandat 1182.446 kb on + strandat 1184.607 kb on + strandat 1184.637 kb on + strandat 1184.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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1,182,094 - +0.8
1,182,414 + -0.5
1,182,414 + -0.2
1,182,446 + -1.1
1,184,607 + -0.2
1,184,637 + -1.0
1,184,645 - -0.1

Or see this region's nucleotide sequence