Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0673

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0671 and DvMF_0672 are separated by 6 nucleotidesDvMF_0672 and DvMF_0673 are separated by 64 nucleotidesDvMF_0673 and DvMF_0674 overlap by 4 nucleotidesDvMF_0674 and DvMF_0675 are separated by 69 nucleotides DvMF_0671: DvMF_0671 - EpsI family protein (RefSeq), at 811,100 to 811,831 _0671 DvMF_0672: DvMF_0672 - eight transmembrane protein EpsH (RefSeq), at 811,838 to 812,692 _0672 DvMF_0673: DvMF_0673 - glycosyl transferase group 1 (RefSeq), at 812,757 to 813,872 _0673 DvMF_0674: DvMF_0674 - hypothetical protein (RefSeq), at 813,869 to 814,453 _0674 DvMF_0675: DvMF_0675 - Acetyltransferase (isoleucine patch superfamily)-like protein (RefSeq), at 814,523 to 815,326 _0675 Position (kb) 812 813 814Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 811.826 kb on - strandat 811.834 kb on + strandat 811.879 kb on - strandat 811.896 kb on - strandat 811.909 kb on - strandat 812.104 kb on + strand, within DvMF_0672at 812.152 kb on + strand, within DvMF_0672at 812.244 kb on + strand, within DvMF_0672at 812.272 kb on - strand, within DvMF_0672at 812.283 kb on + strand, within DvMF_0672at 812.283 kb on + strand, within DvMF_0672at 812.291 kb on - strand, within DvMF_0672at 812.291 kb on - strand, within DvMF_0672at 812.291 kb on - strand, within DvMF_0672at 812.291 kb on - strand, within DvMF_0672at 812.421 kb on - strand, within DvMF_0672at 812.480 kb on - strand, within DvMF_0672at 812.613 kb on + strandat 812.771 kb on + strandat 812.905 kb on + strand, within DvMF_0673at 813.040 kb on + strand, within DvMF_0673at 813.068 kb on + strand, within DvMF_0673at 813.124 kb on + strand, within DvMF_0673at 813.255 kb on + strand, within DvMF_0673at 813.255 kb on + strand, within DvMF_0673at 813.412 kb on - strand, within DvMF_0673at 813.541 kb on + strand, within DvMF_0673at 813.544 kb on - strand, within DvMF_0673at 813.596 kb on + strand, within DvMF_0673at 813.636 kb on + strand, within DvMF_0673at 813.674 kb on - strand, within DvMF_0673at 813.727 kb on - strand, within DvMF_0673at 813.744 kb on - strandat 813.748 kb on + strand, within DvMF_0673at 813.802 kb on - strandat 814.060 kb on + strand, within DvMF_0674at 814.185 kb on - strand, within DvMF_0674at 814.310 kb on + strand, within DvMF_0674at 814.337 kb on - strand, within DvMF_0674at 814.393 kb on + strand, within DvMF_0674at 814.544 kb on + strandat 814.679 kb on - strand, within DvMF_0675

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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811,826 - -1.2
811,834 + -0.1
811,879 - -0.4
811,896 - +0.1
811,909 - -1.1
812,104 + DvMF_0672 0.31 +0.2
812,152 + DvMF_0672 0.37 -2.2
812,244 + DvMF_0672 0.47 -1.1
812,272 - DvMF_0672 0.51 -0.7
812,283 + DvMF_0672 0.52 -1.5
812,283 + DvMF_0672 0.52 -1.1
812,291 - DvMF_0672 0.53 -1.4
812,291 - DvMF_0672 0.53 -1.0
812,291 - DvMF_0672 0.53 -0.4
812,291 - DvMF_0672 0.53 -0.4
812,421 - DvMF_0672 0.68 +0.7
812,480 - DvMF_0672 0.75 -0.8
812,613 + -1.7
812,771 + -1.0
812,905 + DvMF_0673 0.13 -1.0
813,040 + DvMF_0673 0.25 -0.9
813,068 + DvMF_0673 0.28 -0.5
813,124 + DvMF_0673 0.33 -1.3
813,255 + DvMF_0673 0.45 -1.2
813,255 + DvMF_0673 0.45 +0.0
813,412 - DvMF_0673 0.59 -0.8
813,541 + DvMF_0673 0.70 -0.7
813,544 - DvMF_0673 0.71 -1.3
813,596 + DvMF_0673 0.75 -1.0
813,636 + DvMF_0673 0.79 -0.8
813,674 - DvMF_0673 0.82 -0.8
813,727 - DvMF_0673 0.87 -3.7
813,744 - +3.6
813,748 + DvMF_0673 0.89 +0.0
813,802 - -0.8
814,060 + DvMF_0674 0.33 -1.9
814,185 - DvMF_0674 0.54 +0.2
814,310 + DvMF_0674 0.75 -0.5
814,337 - DvMF_0674 0.80 -0.8
814,393 + DvMF_0674 0.90 -1.0
814,544 + -0.8
814,679 - DvMF_0675 0.19 +0.8

Or see this region's nucleotide sequence