Experiment: MoYLS4 with Bacitracin 1.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0608 and DvMF_0609 are separated by 4 nucleotides DvMF_0609 and DvMF_0610 overlap by 4 nucleotides DvMF_0610 and DvMF_0611 are separated by 4 nucleotides
DvMF_0608: DvMF_0608 - transcriptional regulator, NifA subfamily, Fis Family (RefSeq), at 720,022 to 721,605
_0608
DvMF_0609: DvMF_0609 - Indolepyruvate ferredoxin oxidoreductase (RefSeq), at 721,610 to 722,215
_0609
DvMF_0610: DvMF_0610 - indolepyruvate ferredoxin oxidoreductase, alpha subunit (RefSeq), at 722,212 to 724,101
_0610
DvMF_0611: DvMF_0611 - hypothetical protein (RefSeq), at 724,106 to 724,801
_0611
Position (kb) 722
723
724
725 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 721.920 kb on + strand, within DvMF_0609 at 722.002 kb on - strand, within DvMF_0609 at 722.128 kb on - strand, within DvMF_0609 at 722.235 kb on + strand at 722.332 kb on + strand at 722.332 kb on + strand at 722.368 kb on - strand at 722.403 kb on + strand, within DvMF_0610 at 722.541 kb on + strand, within DvMF_0610 at 722.567 kb on + strand, within DvMF_0610 at 722.598 kb on - strand, within DvMF_0610 at 722.607 kb on - strand, within DvMF_0610 at 722.701 kb on - strand, within DvMF_0610 at 722.764 kb on - strand, within DvMF_0610 at 722.845 kb on - strand, within DvMF_0610 at 722.883 kb on - strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.912 kb on + strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.920 kb on - strand, within DvMF_0610 at 722.950 kb on - strand, within DvMF_0610 at 723.371 kb on + strand, within DvMF_0610 at 723.371 kb on + strand, within DvMF_0610 at 723.379 kb on - strand, within DvMF_0610 at 723.403 kb on - strand, within DvMF_0610 at 723.569 kb on - strand, within DvMF_0610 at 723.601 kb on - strand, within DvMF_0610 at 723.815 kb on + strand, within DvMF_0610 at 724.011 kb on - strand at 724.298 kb on + strand, within DvMF_0611 at 724.375 kb on + strand, within DvMF_0611 at 724.566 kb on - strand, within DvMF_0611 at 724.812 kb on - strand at 724.975 kb on - strand at 725.019 kb on - strand at 725.051 kb on + strand at 725.061 kb on - strand at 725.063 kb on + strand at 725.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml remove 721,920 + DvMF_0609 0.51 -3.9 722,002 - DvMF_0609 0.65 -2.0 722,128 - DvMF_0609 0.85 -4.7 722,235 + -2.9 722,332 + -1.6 722,332 + -1.8 722,368 - -2.1 722,403 + DvMF_0610 0.10 -3.2 722,541 + DvMF_0610 0.17 -2.4 722,567 + DvMF_0610 0.19 -1.6 722,598 - DvMF_0610 0.20 -1.9 722,607 - DvMF_0610 0.21 -1.5 722,701 - DvMF_0610 0.26 -2.5 722,764 - DvMF_0610 0.29 -1.0 722,845 - DvMF_0610 0.33 -3.0 722,883 - DvMF_0610 0.36 -2.5 722,912 + DvMF_0610 0.37 -1.7 722,912 + DvMF_0610 0.37 -2.1 722,912 + DvMF_0610 0.37 -2.3 722,912 + DvMF_0610 0.37 -4.1 722,912 + DvMF_0610 0.37 -1.6 722,912 + DvMF_0610 0.37 -3.2 722,912 + DvMF_0610 0.37 -2.8 722,920 - DvMF_0610 0.37 -3.0 722,920 - DvMF_0610 0.37 +0.2 722,920 - DvMF_0610 0.37 -2.5 722,920 - DvMF_0610 0.37 -1.7 722,920 - DvMF_0610 0.37 -3.7 722,920 - DvMF_0610 0.37 -0.3 722,920 - DvMF_0610 0.37 -2.8 722,920 - DvMF_0610 0.37 -3.2 722,920 - DvMF_0610 0.37 -1.1 722,950 - DvMF_0610 0.39 -2.6 723,371 + DvMF_0610 0.61 -4.1 723,371 + DvMF_0610 0.61 -2.7 723,379 - DvMF_0610 0.62 -2.9 723,403 - DvMF_0610 0.63 -4.4 723,569 - DvMF_0610 0.72 -2.9 723,601 - DvMF_0610 0.73 -2.8 723,815 + DvMF_0610 0.85 -3.0 724,011 - -4.1 724,298 + DvMF_0611 0.28 -4.7 724,375 + DvMF_0611 0.39 -1.6 724,566 - DvMF_0611 0.66 -2.7 724,812 - -1.8 724,975 - -0.4 725,019 - -1.2 725,051 + +0.0 725,061 - -1.4 725,063 + -0.4 725,085 + +4.2
Or see this region's nucleotide sequence