Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0427

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0425 and DvMF_0426 are separated by 9 nucleotidesDvMF_0426 and DvMF_0427 are separated by 121 nucleotidesDvMF_0427 and DvMF_0428 are separated by 394 nucleotides DvMF_0425: DvMF_0425 - putative PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq), at 499,989 to 500,438 _0425 DvMF_0426: DvMF_0426 - sigma 54 modulation protein/ribosomal protein S30EA (RefSeq), at 500,448 to 500,993 _0426 DvMF_0427: DvMF_0427 - RNA polymerase, sigma 54 subunit, RpoN (RefSeq), at 501,115 to 502,548 _0427 DvMF_0428: DvMF_0428 - ABC transporter related (RefSeq), at 502,943 to 503,668 _0428 Position (kb) 501 502 503Strain fitness (log2 ratio) -2 -1 0 1at 500.679 kb on - strand, within DvMF_0426at 500.795 kb on + strand, within DvMF_0426at 501.051 kb on - strandat 502.776 kb on - strandat 502.854 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
remove
500,679 - DvMF_0426 0.42 +0.2
500,795 + DvMF_0426 0.64 -0.2
501,051 - -0.4
502,776 - -1.9
502,854 - -0.5

Or see this region's nucleotide sequence