Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0401

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0400 and DvMF_0401 overlap by 8 nucleotidesDvMF_0401 and DvMF_0402 are separated by 1 nucleotidesDvMF_0402 and DvMF_0403 are separated by 233 nucleotides DvMF_0400: DvMF_0400 - putative lipoprotein (RefSeq), at 471,023 to 471,763 _0400 DvMF_0401: DvMF_0401 - Thioredoxin-disulfide reductase (RefSeq), at 471,756 to 472,679 _0401 DvMF_0402: DvMF_0402 - thioredoxin (RefSeq), at 472,681 to 473,004 _0402 DvMF_0403: DvMF_0403 - metalloendopeptidase, glycoprotease family (RefSeq), at 473,238 to 474,485 _0403 Position (kb) 471 472 473Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 471.014 kb on - strandat 471.778 kb on - strandat 472.037 kb on - strand, within DvMF_0401at 472.473 kb on - strand, within DvMF_0401at 472.567 kb on + strand, within DvMF_0401at 473.245 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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471,014 - -1.2
471,778 - -2.0
472,037 - DvMF_0401 0.30 -5.0
472,473 - DvMF_0401 0.78 -5.3
472,567 + DvMF_0401 0.88 -1.1
473,245 + -0.4

Or see this region's nucleotide sequence