Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0294

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0293 and DvMF_0294 are separated by 317 nucleotidesDvMF_0294 and DvMF_0295 are separated by 136 nucleotidesDvMF_0295 and hemA are separated by 8 nucleotides DvMF_0293: DvMF_0293 - adenylate kinase (RefSeq), at 338,355 to 339,026 _0293 DvMF_0294: DvMF_0294 - tRNA(Ile)-lysidine synthetase (RefSeq), at 339,344 to 340,645 _0294 DvMF_0295: DvMF_0295 - hypothetical protein (RefSeq), at 340,782 to 341,117 _0295 DvMF_0296: hemA - glutamyl-tRNA reductase (RefSeq), at 341,126 to 342,454 hemA Position (kb) 339 340 341Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 339.085 kb on + strandat 339.147 kb on - strandat 339.193 kb on - strandat 339.202 kb on - strandat 339.347 kb on + strandat 340.779 kb on + strandat 340.916 kb on + strand, within DvMF_0295at 340.952 kb on + strand, within DvMF_0295at 341.079 kb on - strand, within DvMF_0295at 341.087 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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339,085 + -2.3
339,147 - -0.9
339,193 - -1.7
339,202 - -0.8
339,347 + -0.8
340,779 + -0.3
340,916 + DvMF_0295 0.40 -0.6
340,952 + DvMF_0295 0.51 +0.2
341,079 - DvMF_0295 0.88 +4.1
341,087 - +0.7

Or see this region's nucleotide sequence