Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0247

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0246 and DvMF_0247 are separated by 66 nucleotidesDvMF_0247 and DvMF_0248 are separated by 9 nucleotides DvMF_0246: DvMF_0246 - protein of unknown function DUF1078 domain protein (RefSeq), at 278,706 to 280,343 _0246 DvMF_0247: DvMF_0247 - flagellar hook capping protein (RefSeq), at 280,410 to 281,201 _0247 DvMF_0248: DvMF_0248 - flagellar hook-length control protein (RefSeq), at 281,211 to 283,106 _0248 Position (kb) 280 281 282Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 279.560 kb on - strand, within DvMF_0246at 279.601 kb on + strand, within DvMF_0246at 279.659 kb on + strand, within DvMF_0246at 279.959 kb on + strand, within DvMF_0246at 280.050 kb on - strand, within DvMF_0246at 280.149 kb on + strand, within DvMF_0246at 280.246 kb on + strandat 280.246 kb on + strandat 280.246 kb on + strandat 280.630 kb on + strand, within DvMF_0247at 280.827 kb on + strand, within DvMF_0247at 281.223 kb on + strandat 281.456 kb on + strand, within DvMF_0248at 281.464 kb on - strand, within DvMF_0248at 281.701 kb on - strand, within DvMF_0248at 281.953 kb on + strand, within DvMF_0248at 281.958 kb on + strand, within DvMF_0248at 281.961 kb on - strand, within DvMF_0248

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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279,560 - DvMF_0246 0.52 +5.7
279,601 + DvMF_0246 0.55 +3.6
279,659 + DvMF_0246 0.58 +3.5
279,959 + DvMF_0246 0.76 +3.4
280,050 - DvMF_0246 0.82 +3.5
280,149 + DvMF_0246 0.88 +3.6
280,246 + +3.5
280,246 + +3.8
280,246 + +3.2
280,630 + DvMF_0247 0.28 +2.3
280,827 + DvMF_0247 0.53 +2.0
281,223 + +2.3
281,456 + DvMF_0248 0.13 +3.7
281,464 - DvMF_0248 0.13 +3.1
281,701 - DvMF_0248 0.26 +2.9
281,953 + DvMF_0248 0.39 +3.8
281,958 + DvMF_0248 0.39 +3.0
281,961 - DvMF_0248 0.40 +2.7

Or see this region's nucleotide sequence