Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0178

Experiment: MoYLS4 with Bacitracin 1.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0177 and DvMF_0178 are separated by 166 nucleotidesDvMF_0178 and DvMF_0179 are separated by 300 nucleotides DvMF_0177: DvMF_0177 - Lytic transglycosylase catalytic (RefSeq), at 193,386 to 194,675 _0177 DvMF_0178: DvMF_0178 - outer membrane chaperone Skp (OmpH) (RefSeq), at 194,842 to 195,351 _0178 DvMF_0179: DvMF_0179 - hypothetical protein (RefSeq), at 195,652 to 196,503 _0179 Position (kb) 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1at 193.939 kb on + strand, within DvMF_0177at 194.086 kb on + strand, within DvMF_0177at 194.212 kb on + strand, within DvMF_0177at 194.278 kb on + strand, within DvMF_0177at 194.542 kb on - strand, within DvMF_0177at 194.669 kb on + strandat 194.736 kb on - strandat 194.929 kb on + strand, within DvMF_0178at 194.986 kb on - strand, within DvMF_0178at 195.132 kb on + strand, within DvMF_0178at 195.470 kb on + strandat 195.470 kb on + strandat 195.531 kb on - strandat 195.547 kb on + strandat 195.552 kb on + strandat 195.770 kb on - strand, within DvMF_0179at 195.871 kb on + strand, within DvMF_0179at 196.162 kb on - strand, within DvMF_0179at 196.177 kb on + strand, within DvMF_0179at 196.185 kb on - strand, within DvMF_0179

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Bacitracin 1.4 mg/ml
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193,939 + DvMF_0177 0.43 -1.1
194,086 + DvMF_0177 0.54 -1.9
194,212 + DvMF_0177 0.64 -1.6
194,278 + DvMF_0177 0.69 -0.9
194,542 - DvMF_0177 0.90 -1.7
194,669 + +0.5
194,736 - -2.9
194,929 + DvMF_0178 0.17 -3.4
194,986 - DvMF_0178 0.28 -2.0
195,132 + DvMF_0178 0.57 -3.1
195,470 + -1.1
195,470 + -0.6
195,531 - -0.5
195,547 + -0.7
195,552 + -1.7
195,770 - DvMF_0179 0.14 -1.5
195,871 + DvMF_0179 0.26 -0.7
196,162 - DvMF_0179 0.60 +0.5
196,177 + DvMF_0179 0.62 -0.6
196,185 - DvMF_0179 0.63 -0.8

Or see this region's nucleotide sequence