Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4047 and Shewana3_4048 are separated by 102 nucleotides Shewana3_4048 and Shewana3_4049 are separated by 203 nucleotides Shewana3_4049 and Shewana3_4050 are separated by 276 nucleotides Shewana3_4050 and Shewana3_4051 are separated by 128 nucleotides
Shewana3_4047: Shewana3_4047 - hypothetical protein (RefSeq), at 4,863,399 to 4,864,145
_4047
Shewana3_4048: Shewana3_4048 - 3-methyladenine DNA glycosylase (RefSeq), at 4,864,248 to 4,864,937
_4048
Shewana3_4049: Shewana3_4049 - glutathione S-transferase domain-containing protein (RefSeq), at 4,865,141 to 4,865,788
_4049
Shewana3_4050: Shewana3_4050 - hypothetical protein (RefSeq), at 4,866,065 to 4,866,595
_4050
Shewana3_4051: Shewana3_4051 - oligopeptidase A (RefSeq), at 4,866,724 to 4,868,763
_4051
Position (kb)
4865
4866 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4864.283 kb on - strand at 4864.516 kb on - strand, within Shewana3_4048 at 4864.678 kb on + strand, within Shewana3_4048 at 4864.686 kb on + strand, within Shewana3_4048 at 4864.694 kb on - strand, within Shewana3_4048 at 4864.749 kb on + strand, within Shewana3_4048 at 4864.768 kb on - strand, within Shewana3_4048 at 4864.795 kb on + strand, within Shewana3_4048 at 4864.795 kb on + strand, within Shewana3_4048 at 4864.803 kb on - strand, within Shewana3_4048 at 4864.821 kb on - strand, within Shewana3_4048 at 4864.834 kb on + strand, within Shewana3_4048 at 4864.837 kb on - strand, within Shewana3_4048 at 4864.882 kb on + strand at 4865.307 kb on - strand, within Shewana3_4049 at 4865.323 kb on - strand, within Shewana3_4049 at 4865.407 kb on + strand, within Shewana3_4049 at 4865.419 kb on + strand, within Shewana3_4049 at 4865.866 kb on - strand at 4865.866 kb on - strand at 4865.881 kb on - strand at 4865.881 kb on - strand at 4866.144 kb on + strand, within Shewana3_4050 at 4866.156 kb on + strand, within Shewana3_4050 at 4866.212 kb on + strand, within Shewana3_4050 at 4866.225 kb on - strand, within Shewana3_4050 at 4866.230 kb on - strand, within Shewana3_4050 at 4866.423 kb on - strand, within Shewana3_4050 at 4866.423 kb on - strand, within Shewana3_4050 at 4866.423 kb on - strand, within Shewana3_4050 at 4866.515 kb on - strand, within Shewana3_4050 at 4866.599 kb on - strand at 4866.625 kb on + strand at 4866.633 kb on - strand at 4866.721 kb on + strand at 4866.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 4,864,283 - +1.6 4,864,516 - Shewana3_4048 0.39 -0.6 4,864,678 + Shewana3_4048 0.62 +1.6 4,864,686 + Shewana3_4048 0.63 -0.2 4,864,694 - Shewana3_4048 0.65 +0.1 4,864,749 + Shewana3_4048 0.73 +0.8 4,864,768 - Shewana3_4048 0.75 -0.5 4,864,795 + Shewana3_4048 0.79 -1.6 4,864,795 + Shewana3_4048 0.79 -0.1 4,864,803 - Shewana3_4048 0.80 -3.0 4,864,821 - Shewana3_4048 0.83 -1.1 4,864,834 + Shewana3_4048 0.85 +0.8 4,864,837 - Shewana3_4048 0.85 -0.4 4,864,882 + -1.3 4,865,307 - Shewana3_4049 0.26 +2.1 4,865,323 - Shewana3_4049 0.28 +0.7 4,865,407 + Shewana3_4049 0.41 +0.3 4,865,419 + Shewana3_4049 0.43 -0.3 4,865,866 - +0.2 4,865,866 - -0.4 4,865,881 - -0.8 4,865,881 - -0.6 4,866,144 + Shewana3_4050 0.15 -0.8 4,866,156 + Shewana3_4050 0.17 -1.1 4,866,212 + Shewana3_4050 0.28 -0.7 4,866,225 - Shewana3_4050 0.30 -0.2 4,866,230 - Shewana3_4050 0.31 -0.6 4,866,423 - Shewana3_4050 0.67 -1.2 4,866,423 - Shewana3_4050 0.67 -0.5 4,866,423 - Shewana3_4050 0.67 +0.6 4,866,515 - Shewana3_4050 0.85 +0.9 4,866,599 - +1.1 4,866,625 + +0.3 4,866,633 - -0.1 4,866,721 + -1.1 4,866,743 - -0.2
Or see this region's nucleotide sequence