Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3969 and Shewana3_3970 are separated by 230 nucleotides Shewana3_3970 and Shewana3_3971 overlap by 4 nucleotides Shewana3_3971 and Shewana3_3972 are separated by 3 nucleotides
Shewana3_3969: Shewana3_3969 - RNA polymerase factor sigma-32 (RefSeq), at 4,768,265 to 4,769,122
_3969
Shewana3_3970: Shewana3_3970 - cell division protein FtsX (RefSeq), at 4,769,353 to 4,770,318
_3970
Shewana3_3971: Shewana3_3971 - cell division ATP-binding protein FtsE (RefSeq), at 4,770,315 to 4,771,016
_3971
Shewana3_3972: Shewana3_3972 - signal recognition particle-docking protein FtsY (RefSeq), at 4,771,020 to 4,772,708
_3972
Position (kb)
4769
4770
4771 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4769.199 kb on - strand at 4769.199 kb on - strand at 4769.320 kb on - strand at 4769.367 kb on - strand at 4769.378 kb on - strand at 4769.394 kb on + strand at 4769.607 kb on + strand, within Shewana3_3970 at 4769.615 kb on - strand, within Shewana3_3970 at 4769.706 kb on + strand, within Shewana3_3970 at 4769.741 kb on - strand, within Shewana3_3970 at 4769.822 kb on + strand, within Shewana3_3970 at 4769.836 kb on - strand, within Shewana3_3970 at 4769.923 kb on + strand, within Shewana3_3970 at 4769.931 kb on - strand, within Shewana3_3970 at 4770.008 kb on + strand, within Shewana3_3970 at 4770.022 kb on - strand, within Shewana3_3970 at 4770.042 kb on - strand, within Shewana3_3970 at 4770.161 kb on - strand, within Shewana3_3970 at 4770.182 kb on - strand, within Shewana3_3970 at 4770.320 kb on + strand at 4770.321 kb on - strand at 4770.322 kb on - strand at 4770.422 kb on + strand, within Shewana3_3971 at 4770.508 kb on + strand, within Shewana3_3971 at 4770.509 kb on + strand, within Shewana3_3971 at 4770.618 kb on + strand, within Shewana3_3971 at 4770.731 kb on - strand, within Shewana3_3971 at 4770.887 kb on + strand, within Shewana3_3971 at 4770.990 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 4,769,199 - -0.1 4,769,199 - -1.0 4,769,320 - -0.6 4,769,367 - +0.6 4,769,378 - +0.6 4,769,394 + +0.3 4,769,607 + Shewana3_3970 0.26 +0.3 4,769,615 - Shewana3_3970 0.27 -3.8 4,769,706 + Shewana3_3970 0.37 +1.8 4,769,741 - Shewana3_3970 0.40 -2.1 4,769,822 + Shewana3_3970 0.49 -0.2 4,769,836 - Shewana3_3970 0.50 -2.3 4,769,923 + Shewana3_3970 0.59 -2.9 4,769,931 - Shewana3_3970 0.60 -1.0 4,770,008 + Shewana3_3970 0.68 +0.8 4,770,022 - Shewana3_3970 0.69 -1.8 4,770,042 - Shewana3_3970 0.71 -0.1 4,770,161 - Shewana3_3970 0.84 -2.7 4,770,182 - Shewana3_3970 0.86 -2.3 4,770,320 + -3.6 4,770,321 - -0.5 4,770,322 - -1.8 4,770,422 + Shewana3_3971 0.15 +0.8 4,770,508 + Shewana3_3971 0.27 +1.8 4,770,509 + Shewana3_3971 0.28 -2.4 4,770,618 + Shewana3_3971 0.43 +1.8 4,770,731 - Shewana3_3971 0.59 -1.2 4,770,887 + Shewana3_3971 0.81 -1.7 4,770,990 - -1.3
Or see this region's nucleotide sequence