Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3763 and Shewana3_3764 are separated by 273 nucleotides Shewana3_3764 and Shewana3_3765 are separated by 215 nucleotides Shewana3_3765 and Shewana3_3766 are separated by 59 nucleotides Shewana3_3766 and Shewana3_3767 are separated by 103 nucleotides
Shewana3_3763: Shewana3_3763 - ATP-dependent DNA helicase RecQ (RefSeq), at 4,523,799 to 4,525,622
_3763
Shewana3_3764: Shewana3_3764 - hypothetical protein (RefSeq), at 4,525,896 to 4,526,360
_3764
Shewana3_3765: Shewana3_3765 - transporter DMT superfamily protein (RefSeq), at 4,526,576 to 4,527,463
_3765
Shewana3_3766: Shewana3_3766 - hypothetical protein (RefSeq), at 4,527,523 to 4,528,041
_3766
Shewana3_3767: Shewana3_3767 - N-acetylglutamate synthase (RefSeq), at 4,528,145 to 4,529,482
_3767
Position (kb)
4526
4527
4528 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4525.576 kb on - strand at 4525.576 kb on - strand at 4525.647 kb on - strand at 4525.677 kb on + strand at 4525.849 kb on + strand at 4525.859 kb on + strand at 4525.869 kb on + strand at 4526.102 kb on + strand, within Shewana3_3764 at 4526.130 kb on - strand, within Shewana3_3764 at 4526.140 kb on + strand, within Shewana3_3764 at 4526.255 kb on - strand, within Shewana3_3764 at 4526.300 kb on + strand, within Shewana3_3764 at 4526.515 kb on + strand at 4526.628 kb on + strand at 4526.726 kb on - strand, within Shewana3_3765 at 4526.883 kb on + strand, within Shewana3_3765 at 4527.026 kb on - strand, within Shewana3_3765 at 4527.164 kb on + strand, within Shewana3_3765 at 4527.164 kb on + strand, within Shewana3_3765 at 4527.164 kb on + strand, within Shewana3_3765 at 4527.172 kb on - strand, within Shewana3_3765 at 4527.332 kb on + strand, within Shewana3_3765 at 4527.340 kb on - strand, within Shewana3_3765 at 4527.506 kb on + strand at 4527.520 kb on - strand at 4527.520 kb on - strand at 4527.520 kb on - strand at 4527.574 kb on - strand at 4527.638 kb on + strand, within Shewana3_3766 at 4527.695 kb on + strand, within Shewana3_3766 at 4527.702 kb on + strand, within Shewana3_3766 at 4527.702 kb on + strand, within Shewana3_3766 at 4527.732 kb on + strand, within Shewana3_3766 at 4527.740 kb on - strand, within Shewana3_3766 at 4527.821 kb on + strand, within Shewana3_3766 at 4527.933 kb on + strand, within Shewana3_3766 at 4527.940 kb on - strand, within Shewana3_3766 at 4527.940 kb on - strand, within Shewana3_3766 at 4528.261 kb on - strand at 4528.331 kb on - strand, within Shewana3_3767 at 4528.395 kb on + strand, within Shewana3_3767 at 4528.413 kb on + strand, within Shewana3_3767 at 4528.430 kb on + strand, within Shewana3_3767 at 4528.438 kb on - strand, within Shewana3_3767 at 4528.438 kb on - strand, within Shewana3_3767
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 4,525,576 - -1.5 4,525,576 - -1.5 4,525,647 - -0.5 4,525,677 + -0.5 4,525,849 + +1.5 4,525,859 + -1.2 4,525,869 + +0.6 4,526,102 + Shewana3_3764 0.44 -0.0 4,526,130 - Shewana3_3764 0.50 +0.8 4,526,140 + Shewana3_3764 0.52 -1.0 4,526,255 - Shewana3_3764 0.77 -1.2 4,526,300 + Shewana3_3764 0.87 +1.6 4,526,515 + +1.6 4,526,628 + +1.7 4,526,726 - Shewana3_3765 0.17 -0.2 4,526,883 + Shewana3_3765 0.35 -0.4 4,527,026 - Shewana3_3765 0.51 -0.4 4,527,164 + Shewana3_3765 0.66 +0.7 4,527,164 + Shewana3_3765 0.66 -1.0 4,527,164 + Shewana3_3765 0.66 -1.1 4,527,172 - Shewana3_3765 0.67 -1.3 4,527,332 + Shewana3_3765 0.85 -1.8 4,527,340 - Shewana3_3765 0.86 +0.1 4,527,506 + +0.8 4,527,520 - -1.3 4,527,520 - -0.5 4,527,520 - -0.1 4,527,574 - -2.8 4,527,638 + Shewana3_3766 0.22 +0.7 4,527,695 + Shewana3_3766 0.33 -0.3 4,527,702 + Shewana3_3766 0.34 +0.2 4,527,702 + Shewana3_3766 0.34 -0.5 4,527,732 + Shewana3_3766 0.40 -0.0 4,527,740 - Shewana3_3766 0.42 +0.7 4,527,821 + Shewana3_3766 0.57 -0.8 4,527,933 + Shewana3_3766 0.79 -0.1 4,527,940 - Shewana3_3766 0.80 -1.1 4,527,940 - Shewana3_3766 0.80 -2.7 4,528,261 - +0.5 4,528,331 - Shewana3_3767 0.14 -0.5 4,528,395 + Shewana3_3767 0.19 -2.2 4,528,413 + Shewana3_3767 0.20 +0.1 4,528,430 + Shewana3_3767 0.21 +1.4 4,528,438 - Shewana3_3767 0.22 -0.4 4,528,438 - Shewana3_3767 0.22 -1.2
Or see this region's nucleotide sequence