Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3765

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3763 and Shewana3_3764 are separated by 273 nucleotidesShewana3_3764 and Shewana3_3765 are separated by 215 nucleotidesShewana3_3765 and Shewana3_3766 are separated by 59 nucleotidesShewana3_3766 and Shewana3_3767 are separated by 103 nucleotides Shewana3_3763: Shewana3_3763 - ATP-dependent DNA helicase RecQ (RefSeq), at 4,523,799 to 4,525,622 _3763 Shewana3_3764: Shewana3_3764 - hypothetical protein (RefSeq), at 4,525,896 to 4,526,360 _3764 Shewana3_3765: Shewana3_3765 - transporter DMT superfamily protein (RefSeq), at 4,526,576 to 4,527,463 _3765 Shewana3_3766: Shewana3_3766 - hypothetical protein (RefSeq), at 4,527,523 to 4,528,041 _3766 Shewana3_3767: Shewana3_3767 - N-acetylglutamate synthase (RefSeq), at 4,528,145 to 4,529,482 _3767 Position (kb) 4526 4527 4528Strain fitness (log2 ratio) -3 -2 -1 0 1at 4525.576 kb on - strandat 4525.576 kb on - strandat 4525.647 kb on - strandat 4525.677 kb on + strandat 4525.849 kb on + strandat 4525.859 kb on + strandat 4525.869 kb on + strandat 4526.102 kb on + strand, within Shewana3_3764at 4526.130 kb on - strand, within Shewana3_3764at 4526.140 kb on + strand, within Shewana3_3764at 4526.255 kb on - strand, within Shewana3_3764at 4526.300 kb on + strand, within Shewana3_3764at 4526.515 kb on + strandat 4526.628 kb on + strandat 4526.726 kb on - strand, within Shewana3_3765at 4526.883 kb on + strand, within Shewana3_3765at 4527.026 kb on - strand, within Shewana3_3765at 4527.164 kb on + strand, within Shewana3_3765at 4527.164 kb on + strand, within Shewana3_3765at 4527.164 kb on + strand, within Shewana3_3765at 4527.172 kb on - strand, within Shewana3_3765at 4527.332 kb on + strand, within Shewana3_3765at 4527.340 kb on - strand, within Shewana3_3765at 4527.506 kb on + strandat 4527.520 kb on - strandat 4527.520 kb on - strandat 4527.520 kb on - strandat 4527.574 kb on - strandat 4527.638 kb on + strand, within Shewana3_3766at 4527.695 kb on + strand, within Shewana3_3766at 4527.702 kb on + strand, within Shewana3_3766at 4527.702 kb on + strand, within Shewana3_3766at 4527.732 kb on + strand, within Shewana3_3766at 4527.740 kb on - strand, within Shewana3_3766at 4527.821 kb on + strand, within Shewana3_3766at 4527.933 kb on + strand, within Shewana3_3766at 4527.940 kb on - strand, within Shewana3_3766at 4527.940 kb on - strand, within Shewana3_3766at 4528.261 kb on - strandat 4528.331 kb on - strand, within Shewana3_3767at 4528.395 kb on + strand, within Shewana3_3767at 4528.413 kb on + strand, within Shewana3_3767at 4528.430 kb on + strand, within Shewana3_3767at 4528.438 kb on - strand, within Shewana3_3767at 4528.438 kb on - strand, within Shewana3_3767

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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4,525,576 - -1.5
4,525,576 - -1.5
4,525,647 - -0.5
4,525,677 + -0.5
4,525,849 + +1.5
4,525,859 + -1.2
4,525,869 + +0.6
4,526,102 + Shewana3_3764 0.44 -0.0
4,526,130 - Shewana3_3764 0.50 +0.8
4,526,140 + Shewana3_3764 0.52 -1.0
4,526,255 - Shewana3_3764 0.77 -1.2
4,526,300 + Shewana3_3764 0.87 +1.6
4,526,515 + +1.6
4,526,628 + +1.7
4,526,726 - Shewana3_3765 0.17 -0.2
4,526,883 + Shewana3_3765 0.35 -0.4
4,527,026 - Shewana3_3765 0.51 -0.4
4,527,164 + Shewana3_3765 0.66 +0.7
4,527,164 + Shewana3_3765 0.66 -1.0
4,527,164 + Shewana3_3765 0.66 -1.1
4,527,172 - Shewana3_3765 0.67 -1.3
4,527,332 + Shewana3_3765 0.85 -1.8
4,527,340 - Shewana3_3765 0.86 +0.1
4,527,506 + +0.8
4,527,520 - -1.3
4,527,520 - -0.5
4,527,520 - -0.1
4,527,574 - -2.8
4,527,638 + Shewana3_3766 0.22 +0.7
4,527,695 + Shewana3_3766 0.33 -0.3
4,527,702 + Shewana3_3766 0.34 +0.2
4,527,702 + Shewana3_3766 0.34 -0.5
4,527,732 + Shewana3_3766 0.40 -0.0
4,527,740 - Shewana3_3766 0.42 +0.7
4,527,821 + Shewana3_3766 0.57 -0.8
4,527,933 + Shewana3_3766 0.79 -0.1
4,527,940 - Shewana3_3766 0.80 -1.1
4,527,940 - Shewana3_3766 0.80 -2.7
4,528,261 - +0.5
4,528,331 - Shewana3_3767 0.14 -0.5
4,528,395 + Shewana3_3767 0.19 -2.2
4,528,413 + Shewana3_3767 0.20 +0.1
4,528,430 + Shewana3_3767 0.21 +1.4
4,528,438 - Shewana3_3767 0.22 -0.4
4,528,438 - Shewana3_3767 0.22 -1.2

Or see this region's nucleotide sequence