Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3671 and Shewana3_3672 are separated by 103 nucleotides Shewana3_3672 and argS are separated by 111 nucleotides
Shewana3_3671: Shewana3_3671 - response regulator receiver protein (RefSeq), at 4,408,742 to 4,409,917
_3671
Shewana3_3672: Shewana3_3672 - primosomal protein N' (RefSeq), at 4,410,021 to 4,412,231
_3672
Shewana3_3673: argS - arginyl-tRNA synthetase (RefSeq), at 4,412,343 to 4,414,088
argS
Position (kb)
4410
4411
4412
4413 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4409.061 kb on + strand, within Shewana3_3671 at 4409.088 kb on + strand, within Shewana3_3671 at 4409.088 kb on + strand, within Shewana3_3671 at 4409.157 kb on + strand, within Shewana3_3671 at 4409.172 kb on + strand, within Shewana3_3671 at 4409.172 kb on + strand, within Shewana3_3671 at 4409.180 kb on - strand, within Shewana3_3671 at 4409.180 kb on - strand, within Shewana3_3671 at 4409.202 kb on + strand, within Shewana3_3671 at 4409.210 kb on - strand, within Shewana3_3671 at 4409.230 kb on - strand, within Shewana3_3671 at 4409.230 kb on - strand, within Shewana3_3671 at 4409.307 kb on + strand, within Shewana3_3671 at 4409.307 kb on + strand, within Shewana3_3671 at 4409.549 kb on + strand, within Shewana3_3671 at 4409.653 kb on + strand, within Shewana3_3671 at 4409.654 kb on - strand, within Shewana3_3671 at 4409.666 kb on + strand, within Shewana3_3671 at 4409.666 kb on + strand, within Shewana3_3671 at 4409.674 kb on - strand, within Shewana3_3671 at 4409.674 kb on - strand, within Shewana3_3671 at 4409.694 kb on + strand, within Shewana3_3671 at 4409.860 kb on + strand at 4409.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 4,409,061 + Shewana3_3671 0.27 -0.8 4,409,088 + Shewana3_3671 0.29 +0.1 4,409,088 + Shewana3_3671 0.29 -0.6 4,409,157 + Shewana3_3671 0.35 -0.7 4,409,172 + Shewana3_3671 0.37 +0.7 4,409,172 + Shewana3_3671 0.37 +0.1 4,409,180 - Shewana3_3671 0.37 +2.3 4,409,180 - Shewana3_3671 0.37 +1.2 4,409,202 + Shewana3_3671 0.39 +1.3 4,409,210 - Shewana3_3671 0.40 -1.7 4,409,230 - Shewana3_3671 0.41 +0.5 4,409,230 - Shewana3_3671 0.41 +1.0 4,409,307 + Shewana3_3671 0.48 +0.3 4,409,307 + Shewana3_3671 0.48 -2.9 4,409,549 + Shewana3_3671 0.69 -0.3 4,409,653 + Shewana3_3671 0.77 +0.3 4,409,654 - Shewana3_3671 0.78 +0.8 4,409,666 + Shewana3_3671 0.79 +1.1 4,409,666 + Shewana3_3671 0.79 +0.4 4,409,674 - Shewana3_3671 0.79 -0.3 4,409,674 - Shewana3_3671 0.79 +0.0 4,409,694 + Shewana3_3671 0.81 -0.4 4,409,860 + +1.6 4,409,932 - +0.9
Or see this region's nucleotide sequence