Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3662

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3661 and Shewana3_3662 overlap by 4 nucleotidesShewana3_3662 and Shewana3_3663 are separated by 6 nucleotides Shewana3_3661: Shewana3_3661 - TPR repeat-containing protein (RefSeq), at 4,397,841 to 4,399,184 _3661 Shewana3_3662: Shewana3_3662 - MSHA biogenesis protein MshM (RefSeq), at 4,399,181 to 4,400,110 _3662 Shewana3_3663: Shewana3_3663 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 4,400,117 to 4,401,802 _3663 Position (kb) 4399 4400 4401Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4398.245 kb on - strand, within Shewana3_3661at 4398.316 kb on - strand, within Shewana3_3661at 4398.357 kb on - strand, within Shewana3_3661at 4398.457 kb on + strand, within Shewana3_3661at 4398.526 kb on + strand, within Shewana3_3661at 4398.589 kb on - strand, within Shewana3_3661at 4398.631 kb on - strand, within Shewana3_3661at 4398.685 kb on + strand, within Shewana3_3661at 4398.804 kb on - strand, within Shewana3_3661at 4398.836 kb on + strand, within Shewana3_3661at 4399.098 kb on - strandat 4399.127 kb on + strandat 4399.224 kb on - strandat 4399.226 kb on - strandat 4399.236 kb on - strandat 4399.453 kb on + strand, within Shewana3_3662at 4399.653 kb on - strand, within Shewana3_3662at 4399.709 kb on + strand, within Shewana3_3662at 4399.717 kb on - strand, within Shewana3_3662at 4399.721 kb on + strand, within Shewana3_3662at 4399.845 kb on + strand, within Shewana3_3662at 4399.853 kb on - strand, within Shewana3_3662at 4399.865 kb on + strand, within Shewana3_3662at 4399.875 kb on + strand, within Shewana3_3662at 4399.948 kb on - strand, within Shewana3_3662at 4400.434 kb on + strand, within Shewana3_3663at 4400.486 kb on + strand, within Shewana3_3663at 4400.486 kb on + strand, within Shewana3_3663at 4400.491 kb on + strand, within Shewana3_3663at 4400.532 kb on - strand, within Shewana3_3663at 4400.685 kb on - strand, within Shewana3_3663at 4400.870 kb on + strand, within Shewana3_3663at 4400.944 kb on - strand, within Shewana3_3663at 4401.027 kb on + strand, within Shewana3_3663

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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4,398,245 - Shewana3_3661 0.30 +0.1
4,398,316 - Shewana3_3661 0.35 +0.5
4,398,357 - Shewana3_3661 0.38 -0.2
4,398,457 + Shewana3_3661 0.46 +0.3
4,398,526 + Shewana3_3661 0.51 -0.9
4,398,589 - Shewana3_3661 0.56 -0.0
4,398,631 - Shewana3_3661 0.59 -1.3
4,398,685 + Shewana3_3661 0.63 +0.0
4,398,804 - Shewana3_3661 0.72 -0.0
4,398,836 + Shewana3_3661 0.74 -0.4
4,399,098 - +0.5
4,399,127 + +1.1
4,399,224 - -0.4
4,399,226 - -0.6
4,399,236 - +1.4
4,399,453 + Shewana3_3662 0.29 -0.7
4,399,653 - Shewana3_3662 0.51 -1.0
4,399,709 + Shewana3_3662 0.57 +0.7
4,399,717 - Shewana3_3662 0.58 -0.5
4,399,721 + Shewana3_3662 0.58 -0.2
4,399,845 + Shewana3_3662 0.71 -0.1
4,399,853 - Shewana3_3662 0.72 -0.7
4,399,865 + Shewana3_3662 0.74 +1.1
4,399,875 + Shewana3_3662 0.75 -1.9
4,399,948 - Shewana3_3662 0.82 +0.3
4,400,434 + Shewana3_3663 0.19 +0.5
4,400,486 + Shewana3_3663 0.22 -2.4
4,400,486 + Shewana3_3663 0.22 -4.1
4,400,491 + Shewana3_3663 0.22 -2.1
4,400,532 - Shewana3_3663 0.25 +0.1
4,400,685 - Shewana3_3663 0.34 -0.7
4,400,870 + Shewana3_3663 0.45 +0.1
4,400,944 - Shewana3_3663 0.49 -0.6
4,401,027 + Shewana3_3663 0.54 +0.2

Or see this region's nucleotide sequence