Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3661 and Shewana3_3662 overlap by 4 nucleotides Shewana3_3662 and Shewana3_3663 are separated by 6 nucleotides
Shewana3_3661: Shewana3_3661 - TPR repeat-containing protein (RefSeq), at 4,397,841 to 4,399,184
_3661
Shewana3_3662: Shewana3_3662 - MSHA biogenesis protein MshM (RefSeq), at 4,399,181 to 4,400,110
_3662
Shewana3_3663: Shewana3_3663 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 4,400,117 to 4,401,802
_3663
Position (kb)
4399
4400
4401 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4398.245 kb on - strand, within Shewana3_3661 at 4398.316 kb on - strand, within Shewana3_3661 at 4398.357 kb on - strand, within Shewana3_3661 at 4398.457 kb on + strand, within Shewana3_3661 at 4398.526 kb on + strand, within Shewana3_3661 at 4398.589 kb on - strand, within Shewana3_3661 at 4398.631 kb on - strand, within Shewana3_3661 at 4398.685 kb on + strand, within Shewana3_3661 at 4398.804 kb on - strand, within Shewana3_3661 at 4398.836 kb on + strand, within Shewana3_3661 at 4399.098 kb on - strand at 4399.127 kb on + strand at 4399.224 kb on - strand at 4399.226 kb on - strand at 4399.236 kb on - strand at 4399.453 kb on + strand, within Shewana3_3662 at 4399.653 kb on - strand, within Shewana3_3662 at 4399.709 kb on + strand, within Shewana3_3662 at 4399.717 kb on - strand, within Shewana3_3662 at 4399.721 kb on + strand, within Shewana3_3662 at 4399.845 kb on + strand, within Shewana3_3662 at 4399.853 kb on - strand, within Shewana3_3662 at 4399.865 kb on + strand, within Shewana3_3662 at 4399.875 kb on + strand, within Shewana3_3662 at 4399.948 kb on - strand, within Shewana3_3662 at 4400.434 kb on + strand, within Shewana3_3663 at 4400.486 kb on + strand, within Shewana3_3663 at 4400.486 kb on + strand, within Shewana3_3663 at 4400.491 kb on + strand, within Shewana3_3663 at 4400.532 kb on - strand, within Shewana3_3663 at 4400.685 kb on - strand, within Shewana3_3663 at 4400.870 kb on + strand, within Shewana3_3663 at 4400.944 kb on - strand, within Shewana3_3663 at 4401.027 kb on + strand, within Shewana3_3663
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 4,398,245 - Shewana3_3661 0.30 +0.1 4,398,316 - Shewana3_3661 0.35 +0.5 4,398,357 - Shewana3_3661 0.38 -0.2 4,398,457 + Shewana3_3661 0.46 +0.3 4,398,526 + Shewana3_3661 0.51 -0.9 4,398,589 - Shewana3_3661 0.56 -0.0 4,398,631 - Shewana3_3661 0.59 -1.3 4,398,685 + Shewana3_3661 0.63 +0.0 4,398,804 - Shewana3_3661 0.72 -0.0 4,398,836 + Shewana3_3661 0.74 -0.4 4,399,098 - +0.5 4,399,127 + +1.1 4,399,224 - -0.4 4,399,226 - -0.6 4,399,236 - +1.4 4,399,453 + Shewana3_3662 0.29 -0.7 4,399,653 - Shewana3_3662 0.51 -1.0 4,399,709 + Shewana3_3662 0.57 +0.7 4,399,717 - Shewana3_3662 0.58 -0.5 4,399,721 + Shewana3_3662 0.58 -0.2 4,399,845 + Shewana3_3662 0.71 -0.1 4,399,853 - Shewana3_3662 0.72 -0.7 4,399,865 + Shewana3_3662 0.74 +1.1 4,399,875 + Shewana3_3662 0.75 -1.9 4,399,948 - Shewana3_3662 0.82 +0.3 4,400,434 + Shewana3_3663 0.19 +0.5 4,400,486 + Shewana3_3663 0.22 -2.4 4,400,486 + Shewana3_3663 0.22 -4.1 4,400,491 + Shewana3_3663 0.22 -2.1 4,400,532 - Shewana3_3663 0.25 +0.1 4,400,685 - Shewana3_3663 0.34 -0.7 4,400,870 + Shewana3_3663 0.45 +0.1 4,400,944 - Shewana3_3663 0.49 -0.6 4,401,027 + Shewana3_3663 0.54 +0.2
Or see this region's nucleotide sequence