Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3481

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3480 and Shewana3_3481 are separated by 84 nucleotidesShewana3_3481 and Shewana3_3482 are separated by 333 nucleotides Shewana3_3480: Shewana3_3480 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 4,173,500 to 4,174,765 _3480 Shewana3_3481: Shewana3_3481 - hypoxanthine-guanine phosphoribosyltransferase (RefSeq), at 4,174,850 to 4,175,416 _3481 Shewana3_3482: Shewana3_3482 - alkaline phosphatase (RefSeq), at 4,175,750 to 4,177,516 _3482 Position (kb) 4174 4175 4176Strain fitness (log2 ratio) -2 -1 0 1at 4173.850 kb on - strand, within Shewana3_3480at 4173.908 kb on - strand, within Shewana3_3480at 4174.021 kb on + strand, within Shewana3_3480at 4174.082 kb on + strand, within Shewana3_3480at 4174.140 kb on + strand, within Shewana3_3480at 4174.210 kb on - strand, within Shewana3_3480at 4174.210 kb on - strand, within Shewana3_3480at 4174.405 kb on - strand, within Shewana3_3480at 4174.419 kb on - strand, within Shewana3_3480at 4174.424 kb on - strand, within Shewana3_3480at 4174.451 kb on + strand, within Shewana3_3480at 4174.475 kb on + strand, within Shewana3_3480at 4174.529 kb on + strand, within Shewana3_3480at 4174.712 kb on + strandat 4174.757 kb on + strandat 4174.955 kb on + strand, within Shewana3_3481at 4174.963 kb on - strand, within Shewana3_3481at 4174.968 kb on - strand, within Shewana3_3481at 4175.162 kb on - strand, within Shewana3_3481at 4175.350 kb on - strand, within Shewana3_3481at 4175.427 kb on - strandat 4175.536 kb on + strandat 4175.632 kb on - strandat 4175.775 kb on + strandat 4176.109 kb on + strand, within Shewana3_3482at 4176.117 kb on - strand, within Shewana3_3482at 4176.242 kb on + strand, within Shewana3_3482

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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4,173,850 - Shewana3_3480 0.28 -0.1
4,173,908 - Shewana3_3480 0.32 -0.2
4,174,021 + Shewana3_3480 0.41 +0.8
4,174,082 + Shewana3_3480 0.46 -0.2
4,174,140 + Shewana3_3480 0.51 -0.5
4,174,210 - Shewana3_3480 0.56 +1.2
4,174,210 - Shewana3_3480 0.56 +0.5
4,174,405 - Shewana3_3480 0.71 -0.8
4,174,419 - Shewana3_3480 0.73 +0.6
4,174,424 - Shewana3_3480 0.73 -1.9
4,174,451 + Shewana3_3480 0.75 +0.5
4,174,475 + Shewana3_3480 0.77 +0.8
4,174,529 + Shewana3_3480 0.81 -0.8
4,174,712 + +1.4
4,174,757 + -0.7
4,174,955 + Shewana3_3481 0.19 -0.9
4,174,963 - Shewana3_3481 0.20 +0.5
4,174,968 - Shewana3_3481 0.21 -0.3
4,175,162 - Shewana3_3481 0.55 -0.8
4,175,350 - Shewana3_3481 0.88 -0.4
4,175,427 - +0.6
4,175,536 + -0.2
4,175,632 - -1.4
4,175,775 + -0.4
4,176,109 + Shewana3_3482 0.20 +0.9
4,176,117 - Shewana3_3482 0.21 +0.0
4,176,242 + Shewana3_3482 0.28 +0.2

Or see this region's nucleotide sequence