Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3396 and Shewana3_3397 are separated by 46 nucleotides Shewana3_3397 and Shewana3_3398 are separated by 111 nucleotides
Shewana3_3396: Shewana3_3396 - glucose-methanol-choline oxidoreductase (RefSeq), at 4,065,211 to 4,066,812
_3396
Shewana3_3397: Shewana3_3397 - hypothetical protein (RefSeq), at 4,066,859 to 4,067,365
_3397
Shewana3_3398: Shewana3_3398 - alpha/beta hydrolase fold (RefSeq), at 4,067,477 to 4,068,460
_3398
Position (kb)
4066
4067
4068 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4065.946 kb on - strand, within Shewana3_3396 at 4066.167 kb on + strand, within Shewana3_3396 at 4066.190 kb on - strand, within Shewana3_3396 at 4066.256 kb on + strand, within Shewana3_3396 at 4066.432 kb on - strand, within Shewana3_3396 at 4066.444 kb on + strand, within Shewana3_3396 at 4066.444 kb on + strand, within Shewana3_3396 at 4066.452 kb on - strand, within Shewana3_3396 at 4066.953 kb on - strand, within Shewana3_3397 at 4067.027 kb on + strand, within Shewana3_3397 at 4067.027 kb on - strand, within Shewana3_3397 at 4067.152 kb on + strand, within Shewana3_3397 at 4067.173 kb on - strand, within Shewana3_3397 at 4067.187 kb on - strand, within Shewana3_3397 at 4067.231 kb on - strand, within Shewana3_3397 at 4067.344 kb on + strand at 4067.358 kb on - strand at 4067.530 kb on - strand at 4067.562 kb on - strand at 4067.623 kb on + strand, within Shewana3_3398 at 4067.666 kb on + strand, within Shewana3_3398 at 4067.676 kb on + strand, within Shewana3_3398 at 4067.689 kb on - strand, within Shewana3_3398 at 4067.731 kb on - strand, within Shewana3_3398 at 4067.771 kb on - strand, within Shewana3_3398 at 4067.825 kb on - strand, within Shewana3_3398 at 4067.872 kb on - strand, within Shewana3_3398 at 4067.900 kb on + strand, within Shewana3_3398 at 4067.900 kb on + strand, within Shewana3_3398 at 4067.939 kb on - strand, within Shewana3_3398 at 4067.959 kb on + strand, within Shewana3_3398 at 4068.223 kb on - strand, within Shewana3_3398 at 4068.223 kb on - strand, within Shewana3_3398 at 4068.237 kb on + strand, within Shewana3_3398 at 4068.363 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 4,065,946 - Shewana3_3396 0.46 +1.8 4,066,167 + Shewana3_3396 0.60 -0.6 4,066,190 - Shewana3_3396 0.61 +1.2 4,066,256 + Shewana3_3396 0.65 +0.4 4,066,432 - Shewana3_3396 0.76 -0.7 4,066,444 + Shewana3_3396 0.77 -1.5 4,066,444 + Shewana3_3396 0.77 -0.6 4,066,452 - Shewana3_3396 0.77 +1.0 4,066,953 - Shewana3_3397 0.19 -3.4 4,067,027 + Shewana3_3397 0.33 +1.3 4,067,027 - Shewana3_3397 0.33 -0.2 4,067,152 + Shewana3_3397 0.58 +1.1 4,067,173 - Shewana3_3397 0.62 +0.1 4,067,187 - Shewana3_3397 0.65 -1.1 4,067,231 - Shewana3_3397 0.73 -0.9 4,067,344 + -2.1 4,067,358 - -0.8 4,067,530 - -0.9 4,067,562 - +1.0 4,067,623 + Shewana3_3398 0.15 -0.5 4,067,666 + Shewana3_3398 0.19 -1.4 4,067,676 + Shewana3_3398 0.20 +2.1 4,067,689 - Shewana3_3398 0.22 -0.2 4,067,731 - Shewana3_3398 0.26 +1.5 4,067,771 - Shewana3_3398 0.30 -1.5 4,067,825 - Shewana3_3398 0.35 -0.2 4,067,872 - Shewana3_3398 0.40 -0.7 4,067,900 + Shewana3_3398 0.43 +0.8 4,067,900 + Shewana3_3398 0.43 +0.1 4,067,939 - Shewana3_3398 0.47 +0.2 4,067,959 + Shewana3_3398 0.49 +0.4 4,068,223 - Shewana3_3398 0.76 +1.7 4,068,223 - Shewana3_3398 0.76 -0.6 4,068,237 + Shewana3_3398 0.77 -0.7 4,068,363 + +0.6
Or see this region's nucleotide sequence