Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3233

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3232 and Shewana3_3233 are separated by 283 nucleotidesShewana3_3233 and Shewana3_3234 are separated by 18 nucleotidesShewana3_3234 and Shewana3_3235 are separated by 21 nucleotides Shewana3_3232: Shewana3_3232 - lipid ABC transporter ATPase/inner membrane protein (RefSeq), at 3,876,006 to 3,877,862 _3232 Shewana3_3233: Shewana3_3233 - pyridoxamine 5'-phosphate oxidase-related, FMN-binding (RefSeq), at 3,878,146 to 3,878,703 _3233 Shewana3_3234: Shewana3_3234 - heme utilization protein HuvX (RefSeq), at 3,878,722 to 3,879,288 _3234 Shewana3_3235: Shewana3_3235 - TonB-dependent heme/hemoglobin receptor family protein (RefSeq), at 3,879,310 to 3,881,397 _3235 Position (kb) 3878 3879Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3877.251 kb on - strand, within Shewana3_3232at 3877.375 kb on + strand, within Shewana3_3232at 3877.649 kb on + strand, within Shewana3_3232at 3877.657 kb on - strand, within Shewana3_3232at 3877.815 kb on + strandat 3877.910 kb on + strandat 3878.120 kb on - strandat 3878.285 kb on + strand, within Shewana3_3233at 3878.285 kb on + strand, within Shewana3_3233at 3878.293 kb on - strand, within Shewana3_3233at 3878.293 kb on - strand, within Shewana3_3233at 3878.303 kb on - strand, within Shewana3_3233at 3878.375 kb on - strand, within Shewana3_3233at 3878.401 kb on + strand, within Shewana3_3233at 3878.401 kb on + strand, within Shewana3_3233at 3878.401 kb on + strand, within Shewana3_3233at 3878.467 kb on - strand, within Shewana3_3233at 3878.479 kb on + strand, within Shewana3_3233at 3878.501 kb on - strand, within Shewana3_3233at 3878.501 kb on - strand, within Shewana3_3233at 3878.501 kb on - strand, within Shewana3_3233at 3878.565 kb on - strand, within Shewana3_3233at 3878.589 kb on - strand, within Shewana3_3233at 3878.589 kb on - strand, within Shewana3_3233at 3878.618 kb on + strand, within Shewana3_3233at 3878.734 kb on + strandat 3878.742 kb on - strandat 3879.046 kb on + strand, within Shewana3_3234at 3879.046 kb on + strand, within Shewana3_3234at 3879.070 kb on + strand, within Shewana3_3234at 3879.073 kb on - strand, within Shewana3_3234at 3879.206 kb on - strand, within Shewana3_3234at 3879.213 kb on + strand, within Shewana3_3234at 3879.350 kb on + strandat 3879.350 kb on + strandat 3879.570 kb on + strand, within Shewana3_3235at 3879.626 kb on - strand, within Shewana3_3235at 3879.643 kb on - strand, within Shewana3_3235at 3879.643 kb on - strand, within Shewana3_3235

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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3,877,251 - Shewana3_3232 0.67 +1.7
3,877,375 + Shewana3_3232 0.74 -3.6
3,877,649 + Shewana3_3232 0.88 -0.1
3,877,657 - Shewana3_3232 0.89 -0.6
3,877,815 + -0.2
3,877,910 + +0.8
3,878,120 - -1.9
3,878,285 + Shewana3_3233 0.25 +0.1
3,878,285 + Shewana3_3233 0.25 -0.5
3,878,293 - Shewana3_3233 0.26 +1.5
3,878,293 - Shewana3_3233 0.26 +2.3
3,878,303 - Shewana3_3233 0.28 +1.0
3,878,375 - Shewana3_3233 0.41 +1.7
3,878,401 + Shewana3_3233 0.46 +1.2
3,878,401 + Shewana3_3233 0.46 -0.1
3,878,401 + Shewana3_3233 0.46 +3.0
3,878,467 - Shewana3_3233 0.58 +1.9
3,878,479 + Shewana3_3233 0.60 +2.5
3,878,501 - Shewana3_3233 0.64 +1.1
3,878,501 - Shewana3_3233 0.64 +1.8
3,878,501 - Shewana3_3233 0.64 +0.3
3,878,565 - Shewana3_3233 0.75 +1.9
3,878,589 - Shewana3_3233 0.79 +1.4
3,878,589 - Shewana3_3233 0.79 +2.5
3,878,618 + Shewana3_3233 0.85 -0.9
3,878,734 + +1.9
3,878,742 - +2.4
3,879,046 + Shewana3_3234 0.57 -0.5
3,879,046 + Shewana3_3234 0.57 -0.5
3,879,070 + Shewana3_3234 0.61 -0.9
3,879,073 - Shewana3_3234 0.62 +0.5
3,879,206 - Shewana3_3234 0.85 +1.8
3,879,213 + Shewana3_3234 0.87 +0.5
3,879,350 + +0.5
3,879,350 + +1.1
3,879,570 + Shewana3_3235 0.12 -0.1
3,879,626 - Shewana3_3235 0.15 +0.6
3,879,643 - Shewana3_3235 0.16 +0.3
3,879,643 - Shewana3_3235 0.16 -0.0

Or see this region's nucleotide sequence