Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3232 and Shewana3_3233 are separated by 283 nucleotides Shewana3_3233 and Shewana3_3234 are separated by 18 nucleotides Shewana3_3234 and Shewana3_3235 are separated by 21 nucleotides
Shewana3_3232: Shewana3_3232 - lipid ABC transporter ATPase/inner membrane protein (RefSeq), at 3,876,006 to 3,877,862
_3232
Shewana3_3233: Shewana3_3233 - pyridoxamine 5'-phosphate oxidase-related, FMN-binding (RefSeq), at 3,878,146 to 3,878,703
_3233
Shewana3_3234: Shewana3_3234 - heme utilization protein HuvX (RefSeq), at 3,878,722 to 3,879,288
_3234
Shewana3_3235: Shewana3_3235 - TonB-dependent heme/hemoglobin receptor family protein (RefSeq), at 3,879,310 to 3,881,397
_3235
Position (kb)
3878
3879 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3877.251 kb on - strand, within Shewana3_3232 at 3877.375 kb on + strand, within Shewana3_3232 at 3877.649 kb on + strand, within Shewana3_3232 at 3877.657 kb on - strand, within Shewana3_3232 at 3877.815 kb on + strand at 3877.910 kb on + strand at 3878.120 kb on - strand at 3878.285 kb on + strand, within Shewana3_3233 at 3878.285 kb on + strand, within Shewana3_3233 at 3878.293 kb on - strand, within Shewana3_3233 at 3878.293 kb on - strand, within Shewana3_3233 at 3878.303 kb on - strand, within Shewana3_3233 at 3878.375 kb on - strand, within Shewana3_3233 at 3878.401 kb on + strand, within Shewana3_3233 at 3878.401 kb on + strand, within Shewana3_3233 at 3878.401 kb on + strand, within Shewana3_3233 at 3878.467 kb on - strand, within Shewana3_3233 at 3878.479 kb on + strand, within Shewana3_3233 at 3878.501 kb on - strand, within Shewana3_3233 at 3878.501 kb on - strand, within Shewana3_3233 at 3878.501 kb on - strand, within Shewana3_3233 at 3878.565 kb on - strand, within Shewana3_3233 at 3878.589 kb on - strand, within Shewana3_3233 at 3878.589 kb on - strand, within Shewana3_3233 at 3878.618 kb on + strand, within Shewana3_3233 at 3878.734 kb on + strand at 3878.742 kb on - strand at 3879.046 kb on + strand, within Shewana3_3234 at 3879.046 kb on + strand, within Shewana3_3234 at 3879.070 kb on + strand, within Shewana3_3234 at 3879.073 kb on - strand, within Shewana3_3234 at 3879.206 kb on - strand, within Shewana3_3234 at 3879.213 kb on + strand, within Shewana3_3234 at 3879.350 kb on + strand at 3879.350 kb on + strand at 3879.570 kb on + strand, within Shewana3_3235 at 3879.626 kb on - strand, within Shewana3_3235 at 3879.643 kb on - strand, within Shewana3_3235 at 3879.643 kb on - strand, within Shewana3_3235
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 3,877,251 - Shewana3_3232 0.67 +1.7 3,877,375 + Shewana3_3232 0.74 -3.6 3,877,649 + Shewana3_3232 0.88 -0.1 3,877,657 - Shewana3_3232 0.89 -0.6 3,877,815 + -0.2 3,877,910 + +0.8 3,878,120 - -1.9 3,878,285 + Shewana3_3233 0.25 +0.1 3,878,285 + Shewana3_3233 0.25 -0.5 3,878,293 - Shewana3_3233 0.26 +1.5 3,878,293 - Shewana3_3233 0.26 +2.3 3,878,303 - Shewana3_3233 0.28 +1.0 3,878,375 - Shewana3_3233 0.41 +1.7 3,878,401 + Shewana3_3233 0.46 +1.2 3,878,401 + Shewana3_3233 0.46 -0.1 3,878,401 + Shewana3_3233 0.46 +3.0 3,878,467 - Shewana3_3233 0.58 +1.9 3,878,479 + Shewana3_3233 0.60 +2.5 3,878,501 - Shewana3_3233 0.64 +1.1 3,878,501 - Shewana3_3233 0.64 +1.8 3,878,501 - Shewana3_3233 0.64 +0.3 3,878,565 - Shewana3_3233 0.75 +1.9 3,878,589 - Shewana3_3233 0.79 +1.4 3,878,589 - Shewana3_3233 0.79 +2.5 3,878,618 + Shewana3_3233 0.85 -0.9 3,878,734 + +1.9 3,878,742 - +2.4 3,879,046 + Shewana3_3234 0.57 -0.5 3,879,046 + Shewana3_3234 0.57 -0.5 3,879,070 + Shewana3_3234 0.61 -0.9 3,879,073 - Shewana3_3234 0.62 +0.5 3,879,206 - Shewana3_3234 0.85 +1.8 3,879,213 + Shewana3_3234 0.87 +0.5 3,879,350 + +0.5 3,879,350 + +1.1 3,879,570 + Shewana3_3235 0.12 -0.1 3,879,626 - Shewana3_3235 0.15 +0.6 3,879,643 - Shewana3_3235 0.16 +0.3 3,879,643 - Shewana3_3235 0.16 -0.0
Or see this region's nucleotide sequence