Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3139 and rpsT are separated by 83 nucleotides rpsT and Shewana3_3141 are separated by 60 nucleotides Shewana3_3141 and Shewana3_3142 are separated by 135 nucleotides Shewana3_3142 and Shewana3_3143 are separated by 72 nucleotides Shewana3_3143 and Shewana3_3144 are separated by 107 nucleotides
Shewana3_3139: Shewana3_3139 - hypothetical protein (RefSeq), at 3,766,171 to 3,766,275
_3139
Shewana3_3140: rpsT - 30S ribosomal protein S20 (RefSeq), at 3,766,359 to 3,766,625
rpsT
Shewana3_3141: Shewana3_3141 - ArsR family transcriptional regulator (RefSeq), at 3,766,686 to 3,766,982
_3141
Shewana3_3142: Shewana3_3142 - peptidase M28 (RefSeq), at 3,767,118 to 3,768,524
_3142
Shewana3_3143: Shewana3_3143 - hypothetical protein (RefSeq), at 3,768,597 to 3,769,370
_3143
Shewana3_3144: Shewana3_3144 - amino acid carrier protein (RefSeq), at 3,769,478 to 3,770,944
_3144
Position (kb)
3767
3768
3769 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3766.125 kb on - strand at 3766.176 kb on - strand at 3766.854 kb on + strand, within Shewana3_3141 at 3766.932 kb on + strand, within Shewana3_3141 at 3766.954 kb on + strand at 3766.962 kb on - strand at 3767.002 kb on + strand at 3767.026 kb on - strand at 3767.043 kb on - strand at 3767.045 kb on - strand at 3767.164 kb on + strand at 3767.183 kb on - strand at 3767.183 kb on - strand at 3767.240 kb on + strand at 3767.316 kb on - strand, within Shewana3_3142 at 3767.333 kb on - strand, within Shewana3_3142 at 3767.616 kb on + strand, within Shewana3_3142 at 3767.624 kb on - strand, within Shewana3_3142 at 3767.645 kb on - strand, within Shewana3_3142 at 3767.710 kb on + strand, within Shewana3_3142 at 3767.715 kb on + strand, within Shewana3_3142 at 3767.715 kb on + strand, within Shewana3_3142 at 3767.715 kb on + strand, within Shewana3_3142 at 3767.715 kb on + strand, within Shewana3_3142 at 3767.743 kb on - strand, within Shewana3_3142 at 3767.797 kb on - strand, within Shewana3_3142 at 3767.855 kb on + strand, within Shewana3_3142 at 3768.113 kb on + strand, within Shewana3_3142 at 3768.114 kb on + strand, within Shewana3_3142 at 3768.248 kb on - strand, within Shewana3_3142 at 3768.350 kb on - strand, within Shewana3_3142 at 3768.396 kb on + strand at 3768.396 kb on + strand at 3768.397 kb on - strand at 3768.429 kb on - strand at 3768.429 kb on - strand at 3768.503 kb on + strand at 3768.503 kb on + strand at 3768.511 kb on - strand at 3768.519 kb on + strand at 3768.569 kb on - strand at 3768.617 kb on + strand at 3768.794 kb on + strand, within Shewana3_3143 at 3768.930 kb on - strand, within Shewana3_3143 at 3769.012 kb on - strand, within Shewana3_3143 at 3769.073 kb on + strand, within Shewana3_3143 at 3769.073 kb on + strand, within Shewana3_3143 at 3769.166 kb on - strand, within Shewana3_3143 at 3769.199 kb on - strand, within Shewana3_3143 at 3769.251 kb on + strand, within Shewana3_3143 at 3769.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 3,766,125 - +0.2 3,766,176 - +0.9 3,766,854 + Shewana3_3141 0.57 +0.6 3,766,932 + Shewana3_3141 0.83 +1.5 3,766,954 + -1.0 3,766,962 - +0.7 3,767,002 + +0.5 3,767,026 - +1.2 3,767,043 - -0.4 3,767,045 - -0.6 3,767,164 + +1.5 3,767,183 - -2.0 3,767,183 - -0.5 3,767,240 + +0.1 3,767,316 - Shewana3_3142 0.14 +1.7 3,767,333 - Shewana3_3142 0.15 +0.5 3,767,616 + Shewana3_3142 0.35 -0.6 3,767,624 - Shewana3_3142 0.36 +1.5 3,767,645 - Shewana3_3142 0.37 +1.5 3,767,710 + Shewana3_3142 0.42 -0.3 3,767,715 + Shewana3_3142 0.42 -0.2 3,767,715 + Shewana3_3142 0.42 -1.0 3,767,715 + Shewana3_3142 0.42 -1.1 3,767,715 + Shewana3_3142 0.42 -1.7 3,767,743 - Shewana3_3142 0.44 -0.9 3,767,797 - Shewana3_3142 0.48 +0.6 3,767,855 + Shewana3_3142 0.52 -3.4 3,768,113 + Shewana3_3142 0.71 +0.2 3,768,114 + Shewana3_3142 0.71 +0.7 3,768,248 - Shewana3_3142 0.80 -0.0 3,768,350 - Shewana3_3142 0.88 -1.1 3,768,396 + -0.4 3,768,396 + +0.4 3,768,397 - +2.5 3,768,429 - -3.0 3,768,429 - +0.5 3,768,503 + +0.6 3,768,503 + -0.4 3,768,511 - +0.1 3,768,519 + +0.5 3,768,569 - +0.8 3,768,617 + -1.4 3,768,794 + Shewana3_3143 0.25 +0.7 3,768,930 - Shewana3_3143 0.43 -0.9 3,769,012 - Shewana3_3143 0.54 -4.6 3,769,073 + Shewana3_3143 0.61 -0.1 3,769,073 + Shewana3_3143 0.61 +1.5 3,769,166 - Shewana3_3143 0.74 -2.6 3,769,199 - Shewana3_3143 0.78 -2.2 3,769,251 + Shewana3_3143 0.84 -0.9 3,769,407 - +1.7
Or see this region's nucleotide sequence