Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3044

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3043 and Shewana3_3044 are separated by 691 nucleotidesShewana3_3044 and Shewana3_3045 are separated by 183 nucleotides Shewana3_3043: Shewana3_3043 - dinucleoside polyphosphate hydrolase (RefSeq), at 3,647,913 to 3,648,437 _3043 Shewana3_3044: Shewana3_3044 - DNA mismatch repair protein (RefSeq), at 3,649,129 to 3,649,800 _3044 Shewana3_3045: Shewana3_3045 - adenylate cyclase-related protein (RefSeq), at 3,649,984 to 3,650,991 _3045 Position (kb) 3649 3650Strain fitness (log2 ratio) -2 -1 0 1 2at 3648.332 kb on - strand, within Shewana3_3043at 3648.367 kb on - strand, within Shewana3_3043at 3648.441 kb on + strandat 3648.818 kb on - strandat 3649.051 kb on + strandat 3649.059 kb on - strandat 3649.064 kb on - strandat 3649.167 kb on + strandat 3649.219 kb on + strand, within Shewana3_3044at 3649.244 kb on - strand, within Shewana3_3044at 3649.348 kb on - strand, within Shewana3_3044at 3649.471 kb on + strand, within Shewana3_3044at 3649.529 kb on - strand, within Shewana3_3044at 3649.572 kb on - strand, within Shewana3_3044at 3649.657 kb on - strand, within Shewana3_3044at 3649.676 kb on - strand, within Shewana3_3044at 3649.982 kb on - strandat 3650.223 kb on + strand, within Shewana3_3045at 3650.344 kb on + strand, within Shewana3_3045at 3650.345 kb on + strand, within Shewana3_3045at 3650.441 kb on + strand, within Shewana3_3045at 3650.761 kb on + strand, within Shewana3_3045

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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3,648,332 - Shewana3_3043 0.80 +2.1
3,648,367 - Shewana3_3043 0.86 +1.6
3,648,441 + -1.7
3,648,818 - +0.3
3,649,051 + -1.9
3,649,059 - -0.4
3,649,064 - +0.4
3,649,167 + -0.8
3,649,219 + Shewana3_3044 0.13 +1.4
3,649,244 - Shewana3_3044 0.17 +0.7
3,649,348 - Shewana3_3044 0.33 +0.4
3,649,471 + Shewana3_3044 0.51 +0.2
3,649,529 - Shewana3_3044 0.60 -0.6
3,649,572 - Shewana3_3044 0.66 +1.9
3,649,657 - Shewana3_3044 0.79 -0.2
3,649,676 - Shewana3_3044 0.81 -0.6
3,649,982 - -0.2
3,650,223 + Shewana3_3045 0.24 +1.4
3,650,344 + Shewana3_3045 0.36 -1.4
3,650,345 + Shewana3_3045 0.36 -1.7
3,650,441 + Shewana3_3045 0.45 +0.4
3,650,761 + Shewana3_3045 0.77 -1.2

Or see this region's nucleotide sequence