Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2878

Experiment: Chloride 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2877 and Shewana3_2878 are separated by 226 nucleotidesShewana3_2878 and Shewana3_2879 are separated by 80 nucleotidesShewana3_2879 and Shewana3_2880 are separated by 185 nucleotides Shewana3_2877: Shewana3_2877 - phosphate binding protein (RefSeq), at 3,441,048 to 3,442,019 _2877 Shewana3_2878: Shewana3_2878 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,442,246 to 3,443,544 _2878 Shewana3_2879: Shewana3_2879 - two component transcriptional regulator (RefSeq), at 3,443,625 to 3,444,314 _2879 Shewana3_2880: Shewana3_2880 - porin (RefSeq), at 3,444,500 to 3,445,444 _2880 Position (kb) 3442 3443 3444Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3441.435 kb on - strand, within Shewana3_2877at 3441.789 kb on - strand, within Shewana3_2877at 3442.371 kb on - strandat 3442.395 kb on - strand, within Shewana3_2878at 3442.481 kb on + strand, within Shewana3_2878at 3442.505 kb on - strand, within Shewana3_2878at 3442.588 kb on - strand, within Shewana3_2878at 3442.643 kb on + strand, within Shewana3_2878at 3442.750 kb on - strand, within Shewana3_2878at 3442.800 kb on + strand, within Shewana3_2878at 3442.839 kb on + strand, within Shewana3_2878at 3442.857 kb on + strand, within Shewana3_2878at 3442.934 kb on + strand, within Shewana3_2878at 3442.947 kb on - strand, within Shewana3_2878at 3443.044 kb on - strand, within Shewana3_2878at 3443.044 kb on - strand, within Shewana3_2878at 3443.046 kb on + strand, within Shewana3_2878at 3443.201 kb on - strand, within Shewana3_2878at 3443.201 kb on - strand, within Shewana3_2878at 3443.341 kb on + strand, within Shewana3_2878at 3443.349 kb on - strand, within Shewana3_2878at 3443.434 kb on + strandat 3443.523 kb on + strandat 3443.536 kb on - strandat 3443.571 kb on - strandat 3443.578 kb on + strandat 3443.578 kb on + strandat 3443.719 kb on - strand, within Shewana3_2879at 3443.778 kb on - strand, within Shewana3_2879at 3443.790 kb on + strand, within Shewana3_2879at 3443.960 kb on - strand, within Shewana3_2879at 3443.962 kb on + strand, within Shewana3_2879at 3443.962 kb on + strand, within Shewana3_2879at 3444.034 kb on + strand, within Shewana3_2879at 3444.042 kb on - strand, within Shewana3_2879at 3444.042 kb on - strand, within Shewana3_2879at 3444.097 kb on + strand, within Shewana3_2879at 3444.175 kb on + strand, within Shewana3_2879at 3444.192 kb on - strand, within Shewana3_2879at 3444.464 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
remove
3,441,435 - Shewana3_2877 0.40 -0.0
3,441,789 - Shewana3_2877 0.76 +0.6
3,442,371 - +1.0
3,442,395 - Shewana3_2878 0.11 +0.0
3,442,481 + Shewana3_2878 0.18 +1.8
3,442,505 - Shewana3_2878 0.20 +0.7
3,442,588 - Shewana3_2878 0.26 +0.2
3,442,643 + Shewana3_2878 0.31 -0.2
3,442,750 - Shewana3_2878 0.39 +0.5
3,442,800 + Shewana3_2878 0.43 +0.2
3,442,839 + Shewana3_2878 0.46 +0.5
3,442,857 + Shewana3_2878 0.47 -0.9
3,442,934 + Shewana3_2878 0.53 +0.4
3,442,947 - Shewana3_2878 0.54 +0.8
3,443,044 - Shewana3_2878 0.61 -0.3
3,443,044 - Shewana3_2878 0.61 -1.2
3,443,046 + Shewana3_2878 0.62 +0.4
3,443,201 - Shewana3_2878 0.74 -0.8
3,443,201 - Shewana3_2878 0.74 -1.4
3,443,341 + Shewana3_2878 0.84 -0.2
3,443,349 - Shewana3_2878 0.85 +0.6
3,443,434 + -2.0
3,443,523 + +1.4
3,443,536 - +1.9
3,443,571 - +1.4
3,443,578 + +0.0
3,443,578 + +0.3
3,443,719 - Shewana3_2879 0.14 -1.9
3,443,778 - Shewana3_2879 0.22 +0.5
3,443,790 + Shewana3_2879 0.24 +1.4
3,443,960 - Shewana3_2879 0.49 +0.3
3,443,962 + Shewana3_2879 0.49 +1.0
3,443,962 + Shewana3_2879 0.49 +0.3
3,444,034 + Shewana3_2879 0.59 -0.4
3,444,042 - Shewana3_2879 0.60 -0.1
3,444,042 - Shewana3_2879 0.60 +0.7
3,444,097 + Shewana3_2879 0.68 +0.4
3,444,175 + Shewana3_2879 0.80 -3.4
3,444,192 - Shewana3_2879 0.82 -0.3
3,444,464 + -0.4

Or see this region's nucleotide sequence