Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2769

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2767 and Shewana3_2768 overlap by 1 nucleotidesShewana3_2768 and Shewana3_2769 are separated by 64 nucleotidesShewana3_2769 and Shewana3_2770 are separated by 163 nucleotides Shewana3_2767: Shewana3_2767 - enoyl-CoA hydratase/isomerase (RefSeq), at 3,305,352 to 3,306,503 _2767 Shewana3_2768: Shewana3_2768 - enoyl-CoA hydratase (RefSeq), at 3,306,503 to 3,307,276 _2768 Shewana3_2769: Shewana3_2769 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data), at 3,307,341 to 3,308,498 _2769 Shewana3_2770: Shewana3_2770 - methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq), at 3,308,662 to 3,310,161 _2770 Position (kb) 3307 3308 3309Strain fitness (log2 ratio) -2 -1 0 1 2at 3306.522 kb on + strandat 3306.560 kb on - strandat 3306.785 kb on - strand, within Shewana3_2768at 3306.800 kb on - strand, within Shewana3_2768at 3306.826 kb on - strand, within Shewana3_2768at 3306.837 kb on - strand, within Shewana3_2768at 3306.874 kb on - strand, within Shewana3_2768at 3306.879 kb on - strand, within Shewana3_2768at 3306.882 kb on + strand, within Shewana3_2768at 3306.951 kb on - strand, within Shewana3_2768at 3307.167 kb on + strand, within Shewana3_2768at 3307.176 kb on - strand, within Shewana3_2768at 3307.208 kb on - strandat 3307.256 kb on + strandat 3307.320 kb on + strandat 3307.458 kb on + strand, within Shewana3_2769at 3307.576 kb on - strand, within Shewana3_2769at 3307.728 kb on + strand, within Shewana3_2769at 3307.728 kb on + strand, within Shewana3_2769at 3307.736 kb on - strand, within Shewana3_2769at 3307.736 kb on - strand, within Shewana3_2769at 3307.845 kb on + strand, within Shewana3_2769at 3307.985 kb on - strand, within Shewana3_2769at 3308.002 kb on + strand, within Shewana3_2769at 3308.010 kb on - strand, within Shewana3_2769at 3308.178 kb on - strand, within Shewana3_2769at 3308.184 kb on - strand, within Shewana3_2769at 3308.186 kb on + strand, within Shewana3_2769at 3308.555 kb on - strandat 3308.639 kb on + strandat 3308.678 kb on - strandat 3308.757 kb on - strandat 3308.956 kb on - strand, within Shewana3_2770at 3308.956 kb on - strand, within Shewana3_2770at 3308.956 kb on - strand, within Shewana3_2770at 3309.041 kb on + strand, within Shewana3_2770at 3309.049 kb on - strand, within Shewana3_2770at 3309.199 kb on + strand, within Shewana3_2770at 3309.207 kb on - strand, within Shewana3_2770at 3309.454 kb on - strand, within Shewana3_2770

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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3,306,522 + +0.4
3,306,560 - -2.3
3,306,785 - Shewana3_2768 0.36 +1.4
3,306,800 - Shewana3_2768 0.38 -0.8
3,306,826 - Shewana3_2768 0.42 +0.5
3,306,837 - Shewana3_2768 0.43 -0.7
3,306,874 - Shewana3_2768 0.48 -0.5
3,306,879 - Shewana3_2768 0.49 +0.8
3,306,882 + Shewana3_2768 0.49 +1.4
3,306,951 - Shewana3_2768 0.58 +0.8
3,307,167 + Shewana3_2768 0.86 -0.9
3,307,176 - Shewana3_2768 0.87 +0.0
3,307,208 - +1.9
3,307,256 + +0.8
3,307,320 + +0.2
3,307,458 + Shewana3_2769 0.10 +1.8
3,307,576 - Shewana3_2769 0.20 +1.7
3,307,728 + Shewana3_2769 0.33 -2.3
3,307,728 + Shewana3_2769 0.33 +0.1
3,307,736 - Shewana3_2769 0.34 +1.8
3,307,736 - Shewana3_2769 0.34 +1.8
3,307,845 + Shewana3_2769 0.44 -0.4
3,307,985 - Shewana3_2769 0.56 +1.8
3,308,002 + Shewana3_2769 0.57 +0.4
3,308,010 - Shewana3_2769 0.58 +1.0
3,308,178 - Shewana3_2769 0.72 +0.3
3,308,184 - Shewana3_2769 0.73 -1.5
3,308,186 + Shewana3_2769 0.73 +0.1
3,308,555 - +0.4
3,308,639 + -0.3
3,308,678 - -0.3
3,308,757 - +0.5
3,308,956 - Shewana3_2770 0.20 +2.0
3,308,956 - Shewana3_2770 0.20 +0.6
3,308,956 - Shewana3_2770 0.20 -0.2
3,309,041 + Shewana3_2770 0.25 +1.6
3,309,049 - Shewana3_2770 0.26 -0.1
3,309,199 + Shewana3_2770 0.36 +0.6
3,309,207 - Shewana3_2770 0.36 +0.5
3,309,454 - Shewana3_2770 0.53 -0.4

Or see this region's nucleotide sequence