Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2717 and Shewana3_2718 are separated by 25 nucleotides Shewana3_2718 and Shewana3_2719 are separated by 88 nucleotides Shewana3_2719 and Shewana3_2720 are separated by 653 nucleotides
Shewana3_2717: Shewana3_2717 - hypothetical protein (RefSeq), at 3,248,618 to 3,248,851
_2717
Shewana3_2718: Shewana3_2718 - hypothetical protein (RefSeq), at 3,248,877 to 3,249,239
_2718
Shewana3_2719: Shewana3_2719 - choline/carnitine/betaine transporter (RefSeq), at 3,249,328 to 3,251,304
_2719
Shewana3_2720: Shewana3_2720 - hypothetical protein (RefSeq), at 3,251,958 to 3,252,563
_2720
Position (kb)
3249
3250
3251
3252 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3248.427 kb on + strand at 3248.435 kb on - strand at 3248.552 kb on + strand at 3248.795 kb on + strand, within Shewana3_2717 at 3248.795 kb on + strand, within Shewana3_2717 at 3248.803 kb on - strand, within Shewana3_2717 at 3248.919 kb on + strand, within Shewana3_2718 at 3248.969 kb on - strand, within Shewana3_2718 at 3249.209 kb on - strand at 3249.229 kb on - strand at 3249.507 kb on - strand at 3249.551 kb on - strand, within Shewana3_2719 at 3249.634 kb on - strand, within Shewana3_2719 at 3249.779 kb on - strand, within Shewana3_2719 at 3249.793 kb on - strand, within Shewana3_2719 at 3249.830 kb on + strand, within Shewana3_2719 at 3249.830 kb on + strand, within Shewana3_2719 at 3249.838 kb on - strand, within Shewana3_2719 at 3249.840 kb on + strand, within Shewana3_2719 at 3249.848 kb on - strand, within Shewana3_2719 at 3249.848 kb on - strand, within Shewana3_2719 at 3249.848 kb on - strand, within Shewana3_2719 at 3249.899 kb on + strand, within Shewana3_2719 at 3249.962 kb on + strand, within Shewana3_2719 at 3249.962 kb on + strand, within Shewana3_2719 at 3250.038 kb on + strand, within Shewana3_2719 at 3250.151 kb on - strand, within Shewana3_2719 at 3250.517 kb on - strand, within Shewana3_2719 at 3250.675 kb on - strand, within Shewana3_2719 at 3250.851 kb on - strand, within Shewana3_2719 at 3250.990 kb on - strand, within Shewana3_2719 at 3251.023 kb on + strand, within Shewana3_2719 at 3251.316 kb on + strand at 3251.324 kb on - strand at 3251.324 kb on - strand at 3251.537 kb on - strand at 3251.642 kb on + strand at 3251.733 kb on - strand at 3251.772 kb on - strand at 3251.773 kb on + strand at 3251.815 kb on - strand at 3252.238 kb on + strand, within Shewana3_2720 at 3252.246 kb on - strand, within Shewana3_2720 at 3252.296 kb on - strand, within Shewana3_2720
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 3,248,427 + +1.4 3,248,435 - +2.3 3,248,552 + -1.9 3,248,795 + Shewana3_2717 0.76 -0.5 3,248,795 + Shewana3_2717 0.76 +0.8 3,248,803 - Shewana3_2717 0.79 +0.6 3,248,919 + Shewana3_2718 0.12 +1.0 3,248,969 - Shewana3_2718 0.25 -3.7 3,249,209 - -0.2 3,249,229 - -0.6 3,249,507 - -4.6 3,249,551 - Shewana3_2719 0.11 -3.2 3,249,634 - Shewana3_2719 0.15 -4.9 3,249,779 - Shewana3_2719 0.23 -4.7 3,249,793 - Shewana3_2719 0.24 -3.0 3,249,830 + Shewana3_2719 0.25 -2.2 3,249,830 + Shewana3_2719 0.25 -2.1 3,249,838 - Shewana3_2719 0.26 -5.1 3,249,840 + Shewana3_2719 0.26 +0.4 3,249,848 - Shewana3_2719 0.26 -5.0 3,249,848 - Shewana3_2719 0.26 -5.1 3,249,848 - Shewana3_2719 0.26 -4.2 3,249,899 + Shewana3_2719 0.29 -0.9 3,249,962 + Shewana3_2719 0.32 -0.9 3,249,962 + Shewana3_2719 0.32 -0.6 3,250,038 + Shewana3_2719 0.36 -1.6 3,250,151 - Shewana3_2719 0.42 -3.1 3,250,517 - Shewana3_2719 0.60 -4.8 3,250,675 - Shewana3_2719 0.68 -3.5 3,250,851 - Shewana3_2719 0.77 -1.4 3,250,990 - Shewana3_2719 0.84 -1.9 3,251,023 + Shewana3_2719 0.86 -1.4 3,251,316 + -1.8 3,251,324 - +2.0 3,251,324 - -3.1 3,251,537 - -1.4 3,251,642 + +0.4 3,251,733 - -0.2 3,251,772 - -3.3 3,251,773 + -0.2 3,251,815 - +1.4 3,252,238 + Shewana3_2720 0.46 +1.4 3,252,246 - Shewana3_2720 0.48 +2.0 3,252,296 - Shewana3_2720 0.56 +0.1
Or see this region's nucleotide sequence