Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2719

Experiment: Chloride 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2717 and Shewana3_2718 are separated by 25 nucleotidesShewana3_2718 and Shewana3_2719 are separated by 88 nucleotidesShewana3_2719 and Shewana3_2720 are separated by 653 nucleotides Shewana3_2717: Shewana3_2717 - hypothetical protein (RefSeq), at 3,248,618 to 3,248,851 _2717 Shewana3_2718: Shewana3_2718 - hypothetical protein (RefSeq), at 3,248,877 to 3,249,239 _2718 Shewana3_2719: Shewana3_2719 - choline/carnitine/betaine transporter (RefSeq), at 3,249,328 to 3,251,304 _2719 Shewana3_2720: Shewana3_2720 - hypothetical protein (RefSeq), at 3,251,958 to 3,252,563 _2720 Position (kb) 3249 3250 3251 3252Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3248.427 kb on + strandat 3248.435 kb on - strandat 3248.552 kb on + strandat 3248.795 kb on + strand, within Shewana3_2717at 3248.795 kb on + strand, within Shewana3_2717at 3248.803 kb on - strand, within Shewana3_2717at 3248.919 kb on + strand, within Shewana3_2718at 3248.969 kb on - strand, within Shewana3_2718at 3249.209 kb on - strandat 3249.229 kb on - strandat 3249.507 kb on - strandat 3249.551 kb on - strand, within Shewana3_2719at 3249.634 kb on - strand, within Shewana3_2719at 3249.779 kb on - strand, within Shewana3_2719at 3249.793 kb on - strand, within Shewana3_2719at 3249.830 kb on + strand, within Shewana3_2719at 3249.830 kb on + strand, within Shewana3_2719at 3249.838 kb on - strand, within Shewana3_2719at 3249.840 kb on + strand, within Shewana3_2719at 3249.848 kb on - strand, within Shewana3_2719at 3249.848 kb on - strand, within Shewana3_2719at 3249.848 kb on - strand, within Shewana3_2719at 3249.899 kb on + strand, within Shewana3_2719at 3249.962 kb on + strand, within Shewana3_2719at 3249.962 kb on + strand, within Shewana3_2719at 3250.038 kb on + strand, within Shewana3_2719at 3250.151 kb on - strand, within Shewana3_2719at 3250.517 kb on - strand, within Shewana3_2719at 3250.675 kb on - strand, within Shewana3_2719at 3250.851 kb on - strand, within Shewana3_2719at 3250.990 kb on - strand, within Shewana3_2719at 3251.023 kb on + strand, within Shewana3_2719at 3251.316 kb on + strandat 3251.324 kb on - strandat 3251.324 kb on - strandat 3251.537 kb on - strandat 3251.642 kb on + strandat 3251.733 kb on - strandat 3251.772 kb on - strandat 3251.773 kb on + strandat 3251.815 kb on - strandat 3252.238 kb on + strand, within Shewana3_2720at 3252.246 kb on - strand, within Shewana3_2720at 3252.296 kb on - strand, within Shewana3_2720

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
remove
3,248,427 + +1.4
3,248,435 - +2.3
3,248,552 + -1.9
3,248,795 + Shewana3_2717 0.76 -0.5
3,248,795 + Shewana3_2717 0.76 +0.8
3,248,803 - Shewana3_2717 0.79 +0.6
3,248,919 + Shewana3_2718 0.12 +1.0
3,248,969 - Shewana3_2718 0.25 -3.7
3,249,209 - -0.2
3,249,229 - -0.6
3,249,507 - -4.6
3,249,551 - Shewana3_2719 0.11 -3.2
3,249,634 - Shewana3_2719 0.15 -4.9
3,249,779 - Shewana3_2719 0.23 -4.7
3,249,793 - Shewana3_2719 0.24 -3.0
3,249,830 + Shewana3_2719 0.25 -2.2
3,249,830 + Shewana3_2719 0.25 -2.1
3,249,838 - Shewana3_2719 0.26 -5.1
3,249,840 + Shewana3_2719 0.26 +0.4
3,249,848 - Shewana3_2719 0.26 -5.0
3,249,848 - Shewana3_2719 0.26 -5.1
3,249,848 - Shewana3_2719 0.26 -4.2
3,249,899 + Shewana3_2719 0.29 -0.9
3,249,962 + Shewana3_2719 0.32 -0.9
3,249,962 + Shewana3_2719 0.32 -0.6
3,250,038 + Shewana3_2719 0.36 -1.6
3,250,151 - Shewana3_2719 0.42 -3.1
3,250,517 - Shewana3_2719 0.60 -4.8
3,250,675 - Shewana3_2719 0.68 -3.5
3,250,851 - Shewana3_2719 0.77 -1.4
3,250,990 - Shewana3_2719 0.84 -1.9
3,251,023 + Shewana3_2719 0.86 -1.4
3,251,316 + -1.8
3,251,324 - +2.0
3,251,324 - -3.1
3,251,537 - -1.4
3,251,642 + +0.4
3,251,733 - -0.2
3,251,772 - -3.3
3,251,773 + -0.2
3,251,815 - +1.4
3,252,238 + Shewana3_2720 0.46 +1.4
3,252,246 - Shewana3_2720 0.48 +2.0
3,252,296 - Shewana3_2720 0.56 +0.1

Or see this region's nucleotide sequence