Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2708 and Shewana3_2709 are separated by 488 nucleotides Shewana3_2709 and Shewana3_2710 are separated by 167 nucleotides
Shewana3_2708: Shewana3_2708 - hypothetical protein (RefSeq), at 3,237,131 to 3,237,436
_2708
Shewana3_2709: Shewana3_2709 - hypothetical protein (RefSeq), at 3,237,925 to 3,239,454
_2709
Shewana3_2710: Shewana3_2710 - integral membrane protein TerC (RefSeq), at 3,239,622 to 3,240,599
_2710
Position (kb)
3237
3238
3239
3240 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3236.981 kb on + strand at 3236.988 kb on - strand at 3237.025 kb on - strand at 3237.092 kb on - strand at 3237.116 kb on - strand at 3237.435 kb on - strand at 3237.463 kb on - strand at 3237.642 kb on + strand at 3237.937 kb on - strand at 3238.069 kb on - strand at 3238.124 kb on - strand, within Shewana3_2709 at 3238.131 kb on - strand, within Shewana3_2709 at 3238.181 kb on + strand, within Shewana3_2709 at 3238.347 kb on - strand, within Shewana3_2709 at 3238.416 kb on - strand, within Shewana3_2709 at 3238.716 kb on - strand, within Shewana3_2709 at 3238.847 kb on + strand, within Shewana3_2709 at 3238.852 kb on + strand, within Shewana3_2709 at 3239.005 kb on - strand, within Shewana3_2709 at 3239.256 kb on - strand, within Shewana3_2709 at 3239.333 kb on + strand at 3239.481 kb on + strand at 3239.735 kb on - strand, within Shewana3_2710 at 3239.999 kb on - strand, within Shewana3_2710 at 3240.112 kb on - strand, within Shewana3_2710 at 3240.261 kb on + strand, within Shewana3_2710 at 3240.281 kb on - strand, within Shewana3_2710 at 3240.294 kb on + strand, within Shewana3_2710
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 3,236,981 + +1.5 3,236,988 - -1.9 3,237,025 - -1.9 3,237,092 - -0.6 3,237,116 - -1.2 3,237,435 - -2.6 3,237,463 - +0.1 3,237,642 + -0.8 3,237,937 - +0.6 3,238,069 - -0.1 3,238,124 - Shewana3_2709 0.13 -1.4 3,238,131 - Shewana3_2709 0.13 -2.5 3,238,181 + Shewana3_2709 0.17 -0.6 3,238,347 - Shewana3_2709 0.28 -2.2 3,238,416 - Shewana3_2709 0.32 +1.2 3,238,716 - Shewana3_2709 0.52 -0.5 3,238,847 + Shewana3_2709 0.60 -0.2 3,238,852 + Shewana3_2709 0.61 -0.6 3,239,005 - Shewana3_2709 0.71 -2.8 3,239,256 - Shewana3_2709 0.87 +0.4 3,239,333 + +0.8 3,239,481 + +1.2 3,239,735 - Shewana3_2710 0.12 -2.4 3,239,999 - Shewana3_2710 0.39 -0.4 3,240,112 - Shewana3_2710 0.50 +0.5 3,240,261 + Shewana3_2710 0.65 -0.9 3,240,281 - Shewana3_2710 0.67 +1.9 3,240,294 + Shewana3_2710 0.69 -1.4
Or see this region's nucleotide sequence