Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2697 and Shewana3_2698 overlap by 11 nucleotides Shewana3_2698 and Shewana3_2699 are separated by 20 nucleotides Shewana3_2699 and Shewana3_2700 are separated by 7 nucleotides
Shewana3_2697: Shewana3_2697 - N-acetylglucosamine 6-phosphate deacetylase (RefSeq), at 3,223,185 to 3,224,369
_2697
Shewana3_2698: Shewana3_2698 - N-acetylglucosamine kinase (RefSeq), at 3,224,359 to 3,225,285
_2698
Shewana3_2699: Shewana3_2699 - sugar isomerase (SIS) (RefSeq), at 3,225,306 to 3,226,466
_2699
Shewana3_2700: Shewana3_2700 - tagatose-bisphosphate aldolase noncatalytic subunit (RefSeq), at 3,226,474 to 3,227,760
_2700
Position (kb)
3225
3226
3227 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3224.324 kb on + strand at 3224.662 kb on - strand, within Shewana3_2698 at 3224.664 kb on + strand, within Shewana3_2698 at 3224.715 kb on + strand, within Shewana3_2698 at 3224.723 kb on - strand, within Shewana3_2698 at 3224.723 kb on - strand, within Shewana3_2698 at 3224.754 kb on - strand, within Shewana3_2698 at 3225.044 kb on - strand, within Shewana3_2698 at 3225.094 kb on - strand, within Shewana3_2698 at 3225.128 kb on - strand, within Shewana3_2698 at 3225.364 kb on + strand at 3225.378 kb on - strand at 3225.683 kb on + strand, within Shewana3_2699 at 3225.691 kb on - strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.807 kb on - strand, within Shewana3_2699 at 3225.807 kb on - strand, within Shewana3_2699 at 3225.905 kb on - strand, within Shewana3_2699 at 3226.083 kb on + strand, within Shewana3_2699 at 3226.127 kb on + strand, within Shewana3_2699 at 3226.127 kb on + strand, within Shewana3_2699 at 3226.194 kb on - strand, within Shewana3_2699 at 3226.261 kb on - strand, within Shewana3_2699 at 3226.403 kb on + strand at 3226.403 kb on + strand at 3226.488 kb on - strand at 3226.658 kb on - strand, within Shewana3_2700 at 3227.258 kb on + strand, within Shewana3_2700 at 3227.266 kb on - strand, within Shewana3_2700 at 3227.335 kb on - strand, within Shewana3_2700 at 3227.368 kb on + strand, within Shewana3_2700
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 3,224,324 + -2.7 3,224,662 - Shewana3_2698 0.33 -0.1 3,224,664 + Shewana3_2698 0.33 -0.5 3,224,715 + Shewana3_2698 0.38 +0.9 3,224,723 - Shewana3_2698 0.39 +0.6 3,224,723 - Shewana3_2698 0.39 -0.2 3,224,754 - Shewana3_2698 0.43 +0.1 3,225,044 - Shewana3_2698 0.74 -1.3 3,225,094 - Shewana3_2698 0.79 -1.2 3,225,128 - Shewana3_2698 0.83 +2.8 3,225,364 + +0.8 3,225,378 - +0.2 3,225,683 + Shewana3_2699 0.32 +0.4 3,225,691 - Shewana3_2699 0.33 -0.2 3,225,799 + Shewana3_2699 0.42 -0.9 3,225,799 + Shewana3_2699 0.42 -2.0 3,225,799 + Shewana3_2699 0.42 +0.8 3,225,807 - Shewana3_2699 0.43 +1.2 3,225,807 - Shewana3_2699 0.43 -0.3 3,225,905 - Shewana3_2699 0.52 -1.7 3,226,083 + Shewana3_2699 0.67 -0.2 3,226,127 + Shewana3_2699 0.71 +1.0 3,226,127 + Shewana3_2699 0.71 +0.2 3,226,194 - Shewana3_2699 0.76 +0.1 3,226,261 - Shewana3_2699 0.82 -1.6 3,226,403 + -1.2 3,226,403 + +0.4 3,226,488 - -0.3 3,226,658 - Shewana3_2700 0.14 -1.5 3,227,258 + Shewana3_2700 0.61 -1.0 3,227,266 - Shewana3_2700 0.62 -2.6 3,227,335 - Shewana3_2700 0.67 -1.7 3,227,368 + Shewana3_2700 0.69 -1.8
Or see this region's nucleotide sequence