Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2514

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2513 and mdoG are separated by 417 nucleotidesmdoG and Shewana3_2515 are separated by 700 nucleotides Shewana3_2513: Shewana3_2513 - peptidase E (RefSeq), at 3,003,376 to 3,004,086 _2513 Shewana3_2514: mdoG - glucan biosynthesis protein G (RefSeq), at 3,004,504 to 3,006,084 mdoG Shewana3_2515: Shewana3_2515 - hypothetical protein (RefSeq), at 3,006,785 to 3,007,753 _2515 Position (kb) 3004 3005 3006 3007Strain fitness (log2 ratio) -3 -2 -1 0 1at 3003.960 kb on - strand, within Shewana3_2513at 3004.201 kb on - strandat 3004.592 kb on + strandat 3004.600 kb on - strandat 3004.600 kb on - strandat 3004.613 kb on + strandat 3004.680 kb on + strand, within mdoGat 3004.936 kb on - strand, within mdoGat 3004.998 kb on + strand, within mdoGat 3005.130 kb on + strand, within mdoGat 3005.130 kb on + strand, within mdoGat 3005.130 kb on + strand, within mdoGat 3005.130 kb on + strand, within mdoGat 3005.365 kb on + strand, within mdoGat 3005.412 kb on - strand, within mdoGat 3005.474 kb on - strand, within mdoGat 3005.706 kb on - strand, within mdoGat 3005.706 kb on - strand, within mdoGat 3005.708 kb on + strand, within mdoGat 3005.726 kb on - strand, within mdoGat 3006.034 kb on - strandat 3006.097 kb on + strandat 3006.110 kb on - strandat 3006.151 kb on + strandat 3006.159 kb on - strandat 3006.159 kb on - strandat 3006.159 kb on - strandat 3006.159 kb on - strandat 3006.159 kb on - strandat 3006.159 kb on - strandat 3006.208 kb on + strandat 3006.216 kb on - strandat 3006.216 kb on - strandat 3006.267 kb on - strandat 3006.352 kb on + strandat 3006.352 kb on + strandat 3006.382 kb on - strandat 3006.405 kb on - strandat 3006.519 kb on + strandat 3006.622 kb on + strandat 3006.896 kb on - strand, within Shewana3_2515at 3006.906 kb on + strand, within Shewana3_2515at 3006.918 kb on + strand, within Shewana3_2515at 3006.931 kb on + strand, within Shewana3_2515at 3007.045 kb on + strand, within Shewana3_2515at 3007.052 kb on - strand, within Shewana3_2515

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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3,003,960 - Shewana3_2513 0.82 -2.8
3,004,201 - -2.4
3,004,592 + -1.0
3,004,600 - +0.3
3,004,600 - +1.3
3,004,613 + -0.3
3,004,680 + mdoG Shewana3_2514 0.11 -0.3
3,004,936 - mdoG Shewana3_2514 0.27 -1.3
3,004,998 + mdoG Shewana3_2514 0.31 -1.5
3,005,130 + mdoG Shewana3_2514 0.40 -2.0
3,005,130 + mdoG Shewana3_2514 0.40 -0.2
3,005,130 + mdoG Shewana3_2514 0.40 -2.0
3,005,130 + mdoG Shewana3_2514 0.40 -0.3
3,005,365 + mdoG Shewana3_2514 0.54 -0.6
3,005,412 - mdoG Shewana3_2514 0.57 -2.4
3,005,474 - mdoG Shewana3_2514 0.61 +0.9
3,005,706 - mdoG Shewana3_2514 0.76 -1.0
3,005,706 - mdoG Shewana3_2514 0.76 -3.1
3,005,708 + mdoG Shewana3_2514 0.76 -0.3
3,005,726 - mdoG Shewana3_2514 0.77 -1.0
3,006,034 - +0.3
3,006,097 + +1.6
3,006,110 - +0.3
3,006,151 + +0.3
3,006,159 - -1.6
3,006,159 - +0.4
3,006,159 - -1.5
3,006,159 - -0.6
3,006,159 - +0.2
3,006,159 - +0.4
3,006,208 + +1.3
3,006,216 - -0.4
3,006,216 - +0.6
3,006,267 - +1.6
3,006,352 + +0.3
3,006,352 + +0.3
3,006,382 - +1.3
3,006,405 - +1.3
3,006,519 + +0.2
3,006,622 + -0.0
3,006,896 - Shewana3_2515 0.11 +0.3
3,006,906 + Shewana3_2515 0.12 -0.8
3,006,918 + Shewana3_2515 0.14 -0.5
3,006,931 + Shewana3_2515 0.15 -0.5
3,007,045 + Shewana3_2515 0.27 +0.8
3,007,052 - Shewana3_2515 0.28 +1.3

Or see this region's nucleotide sequence