Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2513 and mdoG are separated by 417 nucleotides mdoG and Shewana3_2515 are separated by 700 nucleotides
Shewana3_2513: Shewana3_2513 - peptidase E (RefSeq), at 3,003,376 to 3,004,086
_2513
Shewana3_2514: mdoG - glucan biosynthesis protein G (RefSeq), at 3,004,504 to 3,006,084
mdoG
Shewana3_2515: Shewana3_2515 - hypothetical protein (RefSeq), at 3,006,785 to 3,007,753
_2515
Position (kb)
3004
3005
3006
3007 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3003.960 kb on - strand, within Shewana3_2513 at 3004.201 kb on - strand at 3004.592 kb on + strand at 3004.600 kb on - strand at 3004.600 kb on - strand at 3004.613 kb on + strand at 3004.680 kb on + strand, within mdoG at 3004.936 kb on - strand, within mdoG at 3004.998 kb on + strand, within mdoG at 3005.130 kb on + strand, within mdoG at 3005.130 kb on + strand, within mdoG at 3005.130 kb on + strand, within mdoG at 3005.130 kb on + strand, within mdoG at 3005.365 kb on + strand, within mdoG at 3005.412 kb on - strand, within mdoG at 3005.474 kb on - strand, within mdoG at 3005.706 kb on - strand, within mdoG at 3005.706 kb on - strand, within mdoG at 3005.708 kb on + strand, within mdoG at 3005.726 kb on - strand, within mdoG at 3006.034 kb on - strand at 3006.097 kb on + strand at 3006.110 kb on - strand at 3006.151 kb on + strand at 3006.159 kb on - strand at 3006.159 kb on - strand at 3006.159 kb on - strand at 3006.159 kb on - strand at 3006.159 kb on - strand at 3006.159 kb on - strand at 3006.208 kb on + strand at 3006.216 kb on - strand at 3006.216 kb on - strand at 3006.267 kb on - strand at 3006.352 kb on + strand at 3006.352 kb on + strand at 3006.382 kb on - strand at 3006.405 kb on - strand at 3006.519 kb on + strand at 3006.622 kb on + strand at 3006.896 kb on - strand, within Shewana3_2515 at 3006.906 kb on + strand, within Shewana3_2515 at 3006.918 kb on + strand, within Shewana3_2515 at 3006.931 kb on + strand, within Shewana3_2515 at 3007.045 kb on + strand, within Shewana3_2515 at 3007.052 kb on - strand, within Shewana3_2515
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 3,003,960 - Shewana3_2513 0.82 -2.8 3,004,201 - -2.4 3,004,592 + -1.0 3,004,600 - +0.3 3,004,600 - +1.3 3,004,613 + -0.3 3,004,680 + mdoG Shewana3_2514 0.11 -0.3 3,004,936 - mdoG Shewana3_2514 0.27 -1.3 3,004,998 + mdoG Shewana3_2514 0.31 -1.5 3,005,130 + mdoG Shewana3_2514 0.40 -2.0 3,005,130 + mdoG Shewana3_2514 0.40 -0.2 3,005,130 + mdoG Shewana3_2514 0.40 -2.0 3,005,130 + mdoG Shewana3_2514 0.40 -0.3 3,005,365 + mdoG Shewana3_2514 0.54 -0.6 3,005,412 - mdoG Shewana3_2514 0.57 -2.4 3,005,474 - mdoG Shewana3_2514 0.61 +0.9 3,005,706 - mdoG Shewana3_2514 0.76 -1.0 3,005,706 - mdoG Shewana3_2514 0.76 -3.1 3,005,708 + mdoG Shewana3_2514 0.76 -0.3 3,005,726 - mdoG Shewana3_2514 0.77 -1.0 3,006,034 - +0.3 3,006,097 + +1.6 3,006,110 - +0.3 3,006,151 + +0.3 3,006,159 - -1.6 3,006,159 - +0.4 3,006,159 - -1.5 3,006,159 - -0.6 3,006,159 - +0.2 3,006,159 - +0.4 3,006,208 + +1.3 3,006,216 - -0.4 3,006,216 - +0.6 3,006,267 - +1.6 3,006,352 + +0.3 3,006,352 + +0.3 3,006,382 - +1.3 3,006,405 - +1.3 3,006,519 + +0.2 3,006,622 + -0.0 3,006,896 - Shewana3_2515 0.11 +0.3 3,006,906 + Shewana3_2515 0.12 -0.8 3,006,918 + Shewana3_2515 0.14 -0.5 3,006,931 + Shewana3_2515 0.15 -0.5 3,007,045 + Shewana3_2515 0.27 +0.8 3,007,052 - Shewana3_2515 0.28 +1.3
Or see this region's nucleotide sequence