Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2472 and Shewana3_2473 are separated by 106 nucleotides Shewana3_2473 and Shewana3_2474 are separated by 287 nucleotides Shewana3_2474 and Shewana3_2475 are separated by 230 nucleotides
Shewana3_2472: Shewana3_2472 - oxoglutarate dehydrogenase (succinyl-transferring) (RefSeq), at 2,958,732 to 2,959,757
_2472
Shewana3_2473: Shewana3_2473 - succinate dehydrogenase (ubiquinone) (RefSeq), at 2,959,864 to 2,960,595
_2473
Shewana3_2474: Shewana3_2474 - hypothetical protein (RefSeq), at 2,960,883 to 2,961,149
_2474
Shewana3_2475: Shewana3_2475 - AMP-binding domain protein (RefSeq), at 2,961,380 to 2,963,104
_2475
Position (kb)
2959
2960
2961 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2959.183 kb on - strand, within Shewana3_2472 at 2959.226 kb on + strand, within Shewana3_2472 at 2959.459 kb on - strand, within Shewana3_2472 at 2959.840 kb on + strand at 2960.210 kb on + strand, within Shewana3_2473 at 2960.250 kb on - strand, within Shewana3_2473 at 2960.611 kb on + strand at 2961.009 kb on + strand, within Shewana3_2474 at 2961.053 kb on + strand, within Shewana3_2474 at 2961.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,959,183 - Shewana3_2472 0.44 +1.3 2,959,226 + Shewana3_2472 0.48 -1.8 2,959,459 - Shewana3_2472 0.71 -0.1 2,959,840 + -0.3 2,960,210 + Shewana3_2473 0.47 -0.7 2,960,250 - Shewana3_2473 0.53 -2.1 2,960,611 + -1.8 2,961,009 + Shewana3_2474 0.47 +0.3 2,961,053 + Shewana3_2474 0.64 +0.2 2,961,504 - +2.1
Or see this region's nucleotide sequence