Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2473

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2472 and Shewana3_2473 are separated by 106 nucleotidesShewana3_2473 and Shewana3_2474 are separated by 287 nucleotidesShewana3_2474 and Shewana3_2475 are separated by 230 nucleotides Shewana3_2472: Shewana3_2472 - oxoglutarate dehydrogenase (succinyl-transferring) (RefSeq), at 2,958,732 to 2,959,757 _2472 Shewana3_2473: Shewana3_2473 - succinate dehydrogenase (ubiquinone) (RefSeq), at 2,959,864 to 2,960,595 _2473 Shewana3_2474: Shewana3_2474 - hypothetical protein (RefSeq), at 2,960,883 to 2,961,149 _2474 Shewana3_2475: Shewana3_2475 - AMP-binding domain protein (RefSeq), at 2,961,380 to 2,963,104 _2475 Position (kb) 2959 2960 2961Strain fitness (log2 ratio) -2 -1 0 1 2at 2959.183 kb on - strand, within Shewana3_2472at 2959.226 kb on + strand, within Shewana3_2472at 2959.459 kb on - strand, within Shewana3_2472at 2959.840 kb on + strandat 2960.210 kb on + strand, within Shewana3_2473at 2960.250 kb on - strand, within Shewana3_2473at 2960.611 kb on + strandat 2961.009 kb on + strand, within Shewana3_2474at 2961.053 kb on + strand, within Shewana3_2474at 2961.504 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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2,959,183 - Shewana3_2472 0.44 +1.3
2,959,226 + Shewana3_2472 0.48 -1.8
2,959,459 - Shewana3_2472 0.71 -0.1
2,959,840 + -0.3
2,960,210 + Shewana3_2473 0.47 -0.7
2,960,250 - Shewana3_2473 0.53 -2.1
2,960,611 + -1.8
2,961,009 + Shewana3_2474 0.47 +0.3
2,961,053 + Shewana3_2474 0.64 +0.2
2,961,504 - +2.1

Or see this region's nucleotide sequence