Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2428

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2426 and Shewana3_2427 are separated by 77 nucleotidesShewana3_2427 and Shewana3_2428 are separated by 66 nucleotidesShewana3_2428 and Shewana3_2429 are separated by 138 nucleotides Shewana3_2426: Shewana3_2426 - nucleoid-associated protein NdpA (RefSeq), at 2,908,992 to 2,910,020 _2426 Shewana3_2427: Shewana3_2427 - hypothetical protein (RefSeq), at 2,910,098 to 2,910,316 _2427 Shewana3_2428: Shewana3_2428 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 2,910,383 to 2,912,173 _2428 Shewana3_2429: Shewana3_2429 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,912,312 to 2,913,424 _2429 Position (kb) 2910 2911 2912 2913Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2909.384 kb on - strand, within Shewana3_2426at 2909.424 kb on - strand, within Shewana3_2426at 2909.821 kb on + strand, within Shewana3_2426at 2909.884 kb on + strand, within Shewana3_2426at 2909.907 kb on + strand, within Shewana3_2426at 2910.054 kb on + strandat 2910.669 kb on + strandat 2911.075 kb on - strand, within Shewana3_2428at 2911.104 kb on - strandat 2911.223 kb on + strand, within Shewana3_2428at 2911.362 kb on + strand, within Shewana3_2428at 2911.362 kb on + strand, within Shewana3_2428at 2911.503 kb on + strand, within Shewana3_2428at 2911.511 kb on - strand, within Shewana3_2428at 2911.731 kb on + strand, within Shewana3_2428at 2911.949 kb on - strand, within Shewana3_2428at 2912.063 kb on + strandat 2912.221 kb on + strandat 2912.409 kb on - strandat 2912.409 kb on - strandat 2912.519 kb on - strand, within Shewana3_2429at 2912.698 kb on + strand, within Shewana3_2429at 2912.700 kb on - strand, within Shewana3_2429at 2912.706 kb on - strand, within Shewana3_2429at 2912.706 kb on - strand, within Shewana3_2429at 2912.766 kb on - strand, within Shewana3_2429at 2912.942 kb on - strand, within Shewana3_2429at 2913.018 kb on - strand, within Shewana3_2429

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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2,909,384 - Shewana3_2426 0.38 -0.0
2,909,424 - Shewana3_2426 0.42 +0.4
2,909,821 + Shewana3_2426 0.81 +1.1
2,909,884 + Shewana3_2426 0.87 -0.3
2,909,907 + Shewana3_2426 0.89 -1.7
2,910,054 + +1.5
2,910,669 + +1.3
2,911,075 - Shewana3_2428 0.39 -2.0
2,911,104 - +0.3
2,911,223 + Shewana3_2428 0.47 +0.9
2,911,362 + Shewana3_2428 0.55 +1.3
2,911,362 + Shewana3_2428 0.55 +0.3
2,911,503 + Shewana3_2428 0.63 -2.4
2,911,511 - Shewana3_2428 0.63 -1.7
2,911,731 + Shewana3_2428 0.75 -2.3
2,911,949 - Shewana3_2428 0.87 -1.0
2,912,063 + +1.8
2,912,221 + -0.4
2,912,409 - +1.9
2,912,409 - -3.4
2,912,519 - Shewana3_2429 0.19 +0.3
2,912,698 + Shewana3_2429 0.35 +1.3
2,912,700 - Shewana3_2429 0.35 -1.4
2,912,706 - Shewana3_2429 0.35 -1.8
2,912,706 - Shewana3_2429 0.35 -0.5
2,912,766 - Shewana3_2429 0.41 -2.7
2,912,942 - Shewana3_2429 0.57 -0.2
2,913,018 - Shewana3_2429 0.63 +0.9

Or see this region's nucleotide sequence