Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2426 and Shewana3_2427 are separated by 77 nucleotides Shewana3_2427 and Shewana3_2428 are separated by 66 nucleotides Shewana3_2428 and Shewana3_2429 are separated by 138 nucleotides
Shewana3_2426: Shewana3_2426 - nucleoid-associated protein NdpA (RefSeq), at 2,908,992 to 2,910,020
_2426
Shewana3_2427: Shewana3_2427 - hypothetical protein (RefSeq), at 2,910,098 to 2,910,316
_2427
Shewana3_2428: Shewana3_2428 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 2,910,383 to 2,912,173
_2428
Shewana3_2429: Shewana3_2429 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,912,312 to 2,913,424
_2429
Position (kb)
2910
2911
2912
2913 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2909.384 kb on - strand, within Shewana3_2426 at 2909.424 kb on - strand, within Shewana3_2426 at 2909.821 kb on + strand, within Shewana3_2426 at 2909.884 kb on + strand, within Shewana3_2426 at 2909.907 kb on + strand, within Shewana3_2426 at 2910.054 kb on + strand at 2910.669 kb on + strand at 2911.075 kb on - strand, within Shewana3_2428 at 2911.104 kb on - strand at 2911.223 kb on + strand, within Shewana3_2428 at 2911.362 kb on + strand, within Shewana3_2428 at 2911.362 kb on + strand, within Shewana3_2428 at 2911.503 kb on + strand, within Shewana3_2428 at 2911.511 kb on - strand, within Shewana3_2428 at 2911.731 kb on + strand, within Shewana3_2428 at 2911.949 kb on - strand, within Shewana3_2428 at 2912.063 kb on + strand at 2912.221 kb on + strand at 2912.409 kb on - strand at 2912.409 kb on - strand at 2912.519 kb on - strand, within Shewana3_2429 at 2912.698 kb on + strand, within Shewana3_2429 at 2912.700 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.766 kb on - strand, within Shewana3_2429 at 2912.942 kb on - strand, within Shewana3_2429 at 2913.018 kb on - strand, within Shewana3_2429
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,909,384 - Shewana3_2426 0.38 -0.0 2,909,424 - Shewana3_2426 0.42 +0.4 2,909,821 + Shewana3_2426 0.81 +1.1 2,909,884 + Shewana3_2426 0.87 -0.3 2,909,907 + Shewana3_2426 0.89 -1.7 2,910,054 + +1.5 2,910,669 + +1.3 2,911,075 - Shewana3_2428 0.39 -2.0 2,911,104 - +0.3 2,911,223 + Shewana3_2428 0.47 +0.9 2,911,362 + Shewana3_2428 0.55 +1.3 2,911,362 + Shewana3_2428 0.55 +0.3 2,911,503 + Shewana3_2428 0.63 -2.4 2,911,511 - Shewana3_2428 0.63 -1.7 2,911,731 + Shewana3_2428 0.75 -2.3 2,911,949 - Shewana3_2428 0.87 -1.0 2,912,063 + +1.8 2,912,221 + -0.4 2,912,409 - +1.9 2,912,409 - -3.4 2,912,519 - Shewana3_2429 0.19 +0.3 2,912,698 + Shewana3_2429 0.35 +1.3 2,912,700 - Shewana3_2429 0.35 -1.4 2,912,706 - Shewana3_2429 0.35 -1.8 2,912,706 - Shewana3_2429 0.35 -0.5 2,912,766 - Shewana3_2429 0.41 -2.7 2,912,942 - Shewana3_2429 0.57 -0.2 2,913,018 - Shewana3_2429 0.63 +0.9
Or see this region's nucleotide sequence