Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2421 and Shewana3_2422 are separated by 235 nucleotides Shewana3_2422 and Shewana3_2423 are separated by 81 nucleotides Shewana3_2423 and Shewana3_2424 are separated by 66 nucleotides
Shewana3_2421: Shewana3_2421 - hypothetical protein (RefSeq), at 2,904,223 to 2,904,831
_2421
Shewana3_2422: Shewana3_2422 - hypothetical protein (RefSeq), at 2,905,067 to 2,905,327
_2422
Shewana3_2423: Shewana3_2423 - peptidase M23B (RefSeq), at 2,905,409 to 2,906,329
_2423
Shewana3_2424: Shewana3_2424 - isocitrate dehydrogenase (NADP(+)) (RefSeq), at 2,906,396 to 2,907,271
_2424
Position (kb)
2905
2906
2907 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2904.468 kb on - strand, within Shewana3_2421 at 2904.542 kb on + strand, within Shewana3_2421 at 2904.608 kb on - strand, within Shewana3_2421 at 2904.722 kb on - strand, within Shewana3_2421 at 2904.797 kb on + strand at 2904.868 kb on - strand at 2904.876 kb on - strand at 2904.968 kb on + strand at 2905.036 kb on + strand at 2905.152 kb on + strand, within Shewana3_2422 at 2905.185 kb on - strand, within Shewana3_2422 at 2905.272 kb on + strand, within Shewana3_2422 at 2905.641 kb on + strand, within Shewana3_2423 at 2905.660 kb on + strand, within Shewana3_2423 at 2905.915 kb on - strand, within Shewana3_2423 at 2906.004 kb on - strand, within Shewana3_2423 at 2906.230 kb on - strand, within Shewana3_2423 at 2906.657 kb on + strand, within Shewana3_2424 at 2906.770 kb on - strand, within Shewana3_2424 at 2906.863 kb on + strand, within Shewana3_2424 at 2906.892 kb on + strand, within Shewana3_2424 at 2906.966 kb on + strand, within Shewana3_2424 at 2906.995 kb on - strand, within Shewana3_2424 at 2907.016 kb on - strand, within Shewana3_2424 at 2907.016 kb on - strand, within Shewana3_2424 at 2907.109 kb on + strand, within Shewana3_2424 at 2907.165 kb on - strand, within Shewana3_2424
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,904,468 - Shewana3_2421 0.40 -1.5 2,904,542 + Shewana3_2421 0.52 -1.9 2,904,608 - Shewana3_2421 0.63 +0.1 2,904,722 - Shewana3_2421 0.82 +0.8 2,904,797 + -3.2 2,904,868 - -1.3 2,904,876 - +1.3 2,904,968 + -0.5 2,905,036 + -0.4 2,905,152 + Shewana3_2422 0.33 -0.4 2,905,185 - Shewana3_2422 0.45 -0.3 2,905,272 + Shewana3_2422 0.79 +2.2 2,905,641 + Shewana3_2423 0.25 +0.6 2,905,660 + Shewana3_2423 0.27 -0.3 2,905,915 - Shewana3_2423 0.55 +0.3 2,906,004 - Shewana3_2423 0.65 -2.5 2,906,230 - Shewana3_2423 0.89 -1.8 2,906,657 + Shewana3_2424 0.30 -0.3 2,906,770 - Shewana3_2424 0.43 +0.3 2,906,863 + Shewana3_2424 0.53 +1.3 2,906,892 + Shewana3_2424 0.57 -0.3 2,906,966 + Shewana3_2424 0.65 +1.3 2,906,995 - Shewana3_2424 0.68 -2.4 2,907,016 - Shewana3_2424 0.71 +0.1 2,907,016 - Shewana3_2424 0.71 -2.6 2,907,109 + Shewana3_2424 0.81 +0.3 2,907,165 - Shewana3_2424 0.88 -1.9
Or see this region's nucleotide sequence