Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2418 and Shewana3_2419 are separated by 85 nucleotides Shewana3_2419 and Shewana3_2420 are separated by 112 nucleotides Shewana3_2420 and Shewana3_2421 are separated by 81 nucleotides
Shewana3_2418: Shewana3_2418 - Ppx/GppA phosphatase (RefSeq), at 2,900,957 to 2,902,513
_2418
Shewana3_2419: Shewana3_2419 - Ion transport protein (RefSeq), at 2,902,599 to 2,903,468
_2419
Shewana3_2420: Shewana3_2420 - hypothetical protein (RefSeq), at 2,903,581 to 2,904,141
_2420
Shewana3_2421: Shewana3_2421 - hypothetical protein (RefSeq), at 2,904,223 to 2,904,831
_2421
Position (kb)
2902
2903
2904 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2901.909 kb on + strand, within Shewana3_2418 at 2901.910 kb on - strand, within Shewana3_2418 at 2901.927 kb on - strand, within Shewana3_2418 at 2901.927 kb on - strand, within Shewana3_2418 at 2902.027 kb on + strand, within Shewana3_2418 at 2902.346 kb on - strand, within Shewana3_2418 at 2902.435 kb on - strand at 2902.891 kb on + strand, within Shewana3_2419 at 2903.017 kb on + strand, within Shewana3_2419 at 2903.039 kb on + strand, within Shewana3_2419 at 2903.130 kb on - strand, within Shewana3_2419 at 2903.219 kb on + strand, within Shewana3_2419 at 2903.227 kb on - strand, within Shewana3_2419 at 2903.347 kb on - strand, within Shewana3_2419 at 2903.347 kb on - strand, within Shewana3_2419 at 2903.347 kb on - strand, within Shewana3_2419 at 2903.638 kb on - strand, within Shewana3_2420 at 2903.661 kb on + strand, within Shewana3_2420 at 2904.018 kb on + strand, within Shewana3_2420 at 2904.023 kb on + strand, within Shewana3_2420 at 2904.468 kb on - strand, within Shewana3_2421
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,901,909 + Shewana3_2418 0.61 +0.1 2,901,910 - Shewana3_2418 0.61 +0.3 2,901,927 - Shewana3_2418 0.62 +1.7 2,901,927 - Shewana3_2418 0.62 +0.5 2,902,027 + Shewana3_2418 0.69 -2.8 2,902,346 - Shewana3_2418 0.89 +0.3 2,902,435 - +1.3 2,902,891 + Shewana3_2419 0.34 -1.0 2,903,017 + Shewana3_2419 0.48 -1.0 2,903,039 + Shewana3_2419 0.51 +1.3 2,903,130 - Shewana3_2419 0.61 +2.7 2,903,219 + Shewana3_2419 0.71 +0.3 2,903,227 - Shewana3_2419 0.72 -0.9 2,903,347 - Shewana3_2419 0.86 +0.1 2,903,347 - Shewana3_2419 0.86 +1.9 2,903,347 - Shewana3_2419 0.86 +0.7 2,903,638 - Shewana3_2420 0.10 -1.7 2,903,661 + Shewana3_2420 0.14 +0.2 2,904,018 + Shewana3_2420 0.78 +0.4 2,904,023 + Shewana3_2420 0.79 +1.1 2,904,468 - Shewana3_2421 0.40 -1.5
Or see this region's nucleotide sequence