Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2406

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2405 and Shewana3_2406 are separated by 239 nucleotidesShewana3_2406 and Shewana3_2407 are separated by 60 nucleotides Shewana3_2405: Shewana3_2405 - alpha-L-glutamate ligase (RefSeq), at 2,882,821 to 2,883,837 _2405 Shewana3_2406: Shewana3_2406 - hypothetical protein (RefSeq), at 2,884,077 to 2,885,000 _2406 Shewana3_2407: Shewana3_2407 - peptidase M28 (RefSeq), at 2,885,061 to 2,886,686 _2407 Position (kb) 2884 2885 2886Strain fitness (log2 ratio) -2 -1 0 1at 2883.101 kb on + strand, within Shewana3_2405at 2883.299 kb on + strand, within Shewana3_2405at 2883.378 kb on + strand, within Shewana3_2405at 2883.770 kb on - strandat 2884.183 kb on + strand, within Shewana3_2406at 2884.254 kb on - strand, within Shewana3_2406at 2884.367 kb on + strand, within Shewana3_2406at 2884.474 kb on - strandat 2884.492 kb on - strand, within Shewana3_2406at 2884.528 kb on - strand, within Shewana3_2406at 2884.572 kb on - strand, within Shewana3_2406at 2884.603 kb on + strand, within Shewana3_2406at 2884.819 kb on + strand, within Shewana3_2406at 2884.880 kb on - strand, within Shewana3_2406at 2885.012 kb on + strandat 2885.084 kb on - strandat 2885.531 kb on + strand, within Shewana3_2407at 2885.577 kb on - strand, within Shewana3_2407at 2885.609 kb on - strand, within Shewana3_2407at 2885.646 kb on + strand, within Shewana3_2407at 2885.661 kb on - strand, within Shewana3_2407at 2885.682 kb on - strand, within Shewana3_2407at 2885.710 kb on + strand, within Shewana3_2407at 2885.710 kb on + strand, within Shewana3_2407at 2885.729 kb on - strand, within Shewana3_2407at 2885.785 kb on + strand, within Shewana3_2407at 2885.890 kb on - strand, within Shewana3_2407

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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2,883,101 + Shewana3_2405 0.28 -0.2
2,883,299 + Shewana3_2405 0.47 -0.6
2,883,378 + Shewana3_2405 0.55 +1.4
2,883,770 - -2.7
2,884,183 + Shewana3_2406 0.11 +0.3
2,884,254 - Shewana3_2406 0.19 -0.7
2,884,367 + Shewana3_2406 0.31 +0.5
2,884,474 - +0.3
2,884,492 - Shewana3_2406 0.45 +0.3
2,884,528 - Shewana3_2406 0.49 -1.9
2,884,572 - Shewana3_2406 0.54 +0.4
2,884,603 + Shewana3_2406 0.57 -0.8
2,884,819 + Shewana3_2406 0.80 +0.9
2,884,880 - Shewana3_2406 0.87 -1.8
2,885,012 + +1.3
2,885,084 - -1.0
2,885,531 + Shewana3_2407 0.29 +1.3
2,885,577 - Shewana3_2407 0.32 -0.3
2,885,609 - Shewana3_2407 0.34 -2.4
2,885,646 + Shewana3_2407 0.36 -1.9
2,885,661 - Shewana3_2407 0.37 +0.8
2,885,682 - Shewana3_2407 0.38 +0.6
2,885,710 + Shewana3_2407 0.40 +1.3
2,885,710 + Shewana3_2407 0.40 +1.3
2,885,729 - Shewana3_2407 0.41 -0.3
2,885,785 + Shewana3_2407 0.45 -0.3
2,885,890 - Shewana3_2407 0.51 +0.3

Or see this region's nucleotide sequence