Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2400

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2399 and Shewana3_2400 are separated by 20 nucleotidesShewana3_2400 and Shewana3_2401 are separated by 101 nucleotides Shewana3_2399: Shewana3_2399 - protein tyrosine phosphatase (RefSeq), at 2,878,032 to 2,878,547 _2399 Shewana3_2400: Shewana3_2400 - hypothetical protein (RefSeq), at 2,878,568 to 2,879,590 _2400 Shewana3_2401: Shewana3_2401 - DNA ligase (RefSeq), at 2,879,692 to 2,880,606 _2401 Position (kb) 2878 2879 2880Strain fitness (log2 ratio) -2 -1 0 1 2at 2877.833 kb on + strandat 2877.963 kb on + strandat 2878.143 kb on - strand, within Shewana3_2399at 2878.182 kb on - strand, within Shewana3_2399at 2878.348 kb on + strand, within Shewana3_2399at 2878.356 kb on - strand, within Shewana3_2399at 2878.484 kb on - strand, within Shewana3_2399at 2878.578 kb on - strandat 2878.643 kb on - strandat 2879.019 kb on - strand, within Shewana3_2400at 2879.157 kb on - strand, within Shewana3_2400at 2879.340 kb on + strand, within Shewana3_2400at 2879.452 kb on + strand, within Shewana3_2400at 2879.470 kb on + strand, within Shewana3_2400at 2880.003 kb on - strand, within Shewana3_2401at 2880.026 kb on - strand, within Shewana3_2401at 2880.034 kb on + strand, within Shewana3_2401at 2880.042 kb on - strand, within Shewana3_2401at 2880.189 kb on - strand, within Shewana3_2401at 2880.355 kb on - strand, within Shewana3_2401

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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2,877,833 + +0.9
2,877,963 + +1.3
2,878,143 - Shewana3_2399 0.22 +1.3
2,878,182 - Shewana3_2399 0.29 +0.1
2,878,348 + Shewana3_2399 0.61 -1.0
2,878,356 - Shewana3_2399 0.63 +2.2
2,878,484 - Shewana3_2399 0.88 +1.9
2,878,578 - -2.0
2,878,643 - -0.7
2,879,019 - Shewana3_2400 0.44 -0.9
2,879,157 - Shewana3_2400 0.58 +0.3
2,879,340 + Shewana3_2400 0.75 +0.5
2,879,452 + Shewana3_2400 0.86 -0.7
2,879,470 + Shewana3_2400 0.88 -1.5
2,880,003 - Shewana3_2401 0.34 -0.7
2,880,026 - Shewana3_2401 0.37 -0.7
2,880,034 + Shewana3_2401 0.37 +2.1
2,880,042 - Shewana3_2401 0.38 +0.9
2,880,189 - Shewana3_2401 0.54 -1.2
2,880,355 - Shewana3_2401 0.72 -0.9

Or see this region's nucleotide sequence