Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2334 and Shewana3_2335 are separated by 78 nucleotides Shewana3_2335 and Shewana3_2336 overlap by 8 nucleotides Shewana3_2336 and Shewana3_2337 are separated by 95 nucleotides Shewana3_2337 and Shewana3_2338 are separated by 244 nucleotides
Shewana3_2334: Shewana3_2334 - protein tyrosine phosphatase (RefSeq), at 2,809,813 to 2,810,319
_2334
Shewana3_2335: Shewana3_2335 - ArsR family transcriptional regulator (RefSeq), at 2,810,398 to 2,810,745
_2335
Shewana3_2336: Shewana3_2336 - protein tyrosine phosphatase (RefSeq), at 2,810,738 to 2,811,154
_2336
Shewana3_2337: Shewana3_2337 - ArsR family transcriptional regulator (RefSeq), at 2,811,250 to 2,811,537
_2337
Shewana3_2338: Shewana3_2338 - permease (RefSeq), at 2,811,782 to 2,812,858
_2338
Position (kb)
2811
2812 Strain fitness (log2 ratio)
-1
0
1 at 2810.667 kb on - strand, within Shewana3_2335 at 2810.743 kb on - strand at 2810.804 kb on + strand, within Shewana3_2336 at 2810.855 kb on - strand, within Shewana3_2336 at 2811.036 kb on + strand at 2811.244 kb on - strand at 2811.417 kb on - strand, within Shewana3_2337 at 2811.485 kb on - strand, within Shewana3_2337 at 2811.629 kb on + strand at 2811.656 kb on - strand at 2811.848 kb on - strand at 2811.949 kb on + strand, within Shewana3_2338 at 2812.157 kb on + strand, within Shewana3_2338 at 2812.228 kb on + strand, within Shewana3_2338
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,810,667 - Shewana3_2335 0.77 -0.2 2,810,743 - +0.9 2,810,804 + Shewana3_2336 0.16 +0.4 2,810,855 - Shewana3_2336 0.28 +0.4 2,811,036 + +1.4 2,811,244 - -1.5 2,811,417 - Shewana3_2337 0.58 -0.2 2,811,485 - Shewana3_2337 0.82 +1.4 2,811,629 + +0.4 2,811,656 - +0.9 2,811,848 - -1.6 2,811,949 + Shewana3_2338 0.16 -0.2 2,812,157 + Shewana3_2338 0.35 -0.6 2,812,228 + Shewana3_2338 0.41 -1.0
Or see this region's nucleotide sequence