Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2308 and Shewana3_2309 are separated by 151 nucleotides Shewana3_2309 and Shewana3_2310 are separated by 152 nucleotides
Shewana3_2308: Shewana3_2308 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 2,773,278 to 2,775,536
_2308
Shewana3_2309: Shewana3_2309 - Fmu (Sun) domain-containing protein (RefSeq), at 2,775,688 to 2,776,902
_2309
Shewana3_2310: Shewana3_2310 - glucose/galactose transporter (RefSeq), at 2,777,055 to 2,778,326
_2310
Position (kb)
2775
2776
2777 Strain fitness (log2 ratio)
-2
-1
0
1 at 2774.860 kb on + strand, within Shewana3_2308 at 2775.119 kb on + strand, within Shewana3_2308 at 2775.127 kb on - strand, within Shewana3_2308 at 2775.445 kb on - strand at 2775.936 kb on - strand, within Shewana3_2309 at 2776.192 kb on - strand, within Shewana3_2309 at 2776.307 kb on + strand, within Shewana3_2309 at 2776.467 kb on - strand, within Shewana3_2309 at 2776.477 kb on - strand, within Shewana3_2309 at 2776.538 kb on + strand, within Shewana3_2309 at 2776.545 kb on + strand, within Shewana3_2309 at 2776.626 kb on + strand, within Shewana3_2309 at 2776.626 kb on + strand, within Shewana3_2309 at 2776.634 kb on - strand, within Shewana3_2309 at 2776.634 kb on - strand, within Shewana3_2309 at 2776.662 kb on + strand, within Shewana3_2309 at 2776.670 kb on - strand, within Shewana3_2309 at 2776.757 kb on - strand, within Shewana3_2309 at 2776.800 kb on + strand at 2776.824 kb on - strand at 2776.835 kb on + strand at 2776.945 kb on - strand at 2776.966 kb on + strand at 2777.095 kb on - strand at 2777.095 kb on - strand at 2777.192 kb on - strand, within Shewana3_2310 at 2777.213 kb on + strand, within Shewana3_2310 at 2777.213 kb on + strand, within Shewana3_2310 at 2777.221 kb on - strand, within Shewana3_2310 at 2777.221 kb on - strand, within Shewana3_2310 at 2777.221 kb on - strand, within Shewana3_2310 at 2777.230 kb on - strand, within Shewana3_2310 at 2777.468 kb on - strand, within Shewana3_2310 at 2777.493 kb on + strand, within Shewana3_2310 at 2777.582 kb on - strand, within Shewana3_2310 at 2777.704 kb on - strand, within Shewana3_2310 at 2777.768 kb on - strand, within Shewana3_2310 at 2777.768 kb on - strand, within Shewana3_2310 at 2777.802 kb on + strand, within Shewana3_2310 at 2777.892 kb on + strand, within Shewana3_2310
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,774,860 + Shewana3_2308 0.70 +0.4 2,775,119 + Shewana3_2308 0.81 +1.4 2,775,127 - Shewana3_2308 0.82 +0.4 2,775,445 - +0.9 2,775,936 - Shewana3_2309 0.20 -0.5 2,776,192 - Shewana3_2309 0.41 +0.0 2,776,307 + Shewana3_2309 0.51 +0.4 2,776,467 - Shewana3_2309 0.64 +1.7 2,776,477 - Shewana3_2309 0.65 +0.8 2,776,538 + Shewana3_2309 0.70 -1.4 2,776,545 + Shewana3_2309 0.71 +1.0 2,776,626 + Shewana3_2309 0.77 -2.1 2,776,626 + Shewana3_2309 0.77 -0.5 2,776,634 - Shewana3_2309 0.78 +1.2 2,776,634 - Shewana3_2309 0.78 -0.4 2,776,662 + Shewana3_2309 0.80 -0.6 2,776,670 - Shewana3_2309 0.81 +0.5 2,776,757 - Shewana3_2309 0.88 +0.6 2,776,800 + +0.8 2,776,824 - -0.3 2,776,835 + -2.3 2,776,945 - +1.6 2,776,966 + +0.4 2,777,095 - +1.3 2,777,095 - -0.0 2,777,192 - Shewana3_2310 0.11 -0.5 2,777,213 + Shewana3_2310 0.12 +1.4 2,777,213 + Shewana3_2310 0.12 +0.1 2,777,221 - Shewana3_2310 0.13 -0.6 2,777,221 - Shewana3_2310 0.13 -0.2 2,777,221 - Shewana3_2310 0.13 -0.6 2,777,230 - Shewana3_2310 0.14 -0.5 2,777,468 - Shewana3_2310 0.32 +0.7 2,777,493 + Shewana3_2310 0.34 +1.4 2,777,582 - Shewana3_2310 0.41 +0.9 2,777,704 - Shewana3_2310 0.51 +0.0 2,777,768 - Shewana3_2310 0.56 -1.8 2,777,768 - Shewana3_2310 0.56 -1.6 2,777,802 + Shewana3_2310 0.59 -1.4 2,777,892 + Shewana3_2310 0.66 -0.6
Or see this region's nucleotide sequence