Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2249 and Shewana3_2250 are separated by 533 nucleotides Shewana3_2250 and Shewana3_2251 are separated by 119 nucleotides Shewana3_2251 and Shewana3_2252 are separated by 104 nucleotides
Shewana3_2249: Shewana3_2249 - methyltransferase type 12 (RefSeq), at 2,710,401 to 2,711,054
_2249
Shewana3_2250: Shewana3_2250 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 2,711,588 to 2,712,895
_2250
Shewana3_2251: Shewana3_2251 - DNA polymerase III, epsilon subunit (RefSeq), at 2,713,015 to 2,713,704
_2251
Shewana3_2252: Shewana3_2252 - LacI family transcription regulator (RefSeq), at 2,713,809 to 2,714,849
_2252
Position (kb)
2711
2712
2713 Strain fitness (log2 ratio)
-2
-1
0
1 at 2710.777 kb on - strand, within Shewana3_2249 at 2710.837 kb on + strand, within Shewana3_2249 at 2710.863 kb on + strand, within Shewana3_2249 at 2711.063 kb on + strand at 2711.063 kb on + strand at 2711.063 kb on + strand at 2711.063 kb on + strand at 2711.200 kb on + strand at 2711.609 kb on - strand at 2711.652 kb on - strand at 2711.689 kb on + strand at 2711.689 kb on + strand at 2712.294 kb on - strand, within Shewana3_2250 at 2712.682 kb on - strand, within Shewana3_2250 at 2712.762 kb on + strand, within Shewana3_2250 at 2713.259 kb on + strand, within Shewana3_2251 at 2713.301 kb on + strand, within Shewana3_2251 at 2713.568 kb on + strand, within Shewana3_2251 at 2713.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,710,777 - Shewana3_2249 0.57 -2.2 2,710,837 + Shewana3_2249 0.67 +0.4 2,710,863 + Shewana3_2249 0.71 +0.4 2,711,063 + +0.4 2,711,063 + -0.2 2,711,063 + -0.6 2,711,063 + +1.4 2,711,200 + -2.0 2,711,609 - -2.0 2,711,652 - +1.4 2,711,689 + -1.6 2,711,689 + -1.2 2,712,294 - Shewana3_2250 0.54 -1.2 2,712,682 - Shewana3_2250 0.84 -1.6 2,712,762 + Shewana3_2250 0.90 -0.2 2,713,259 + Shewana3_2251 0.35 +1.2 2,713,301 + Shewana3_2251 0.41 -1.4 2,713,568 + Shewana3_2251 0.80 -0.9 2,713,709 + +0.9
Or see this region's nucleotide sequence