Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2250

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2249 and Shewana3_2250 are separated by 533 nucleotidesShewana3_2250 and Shewana3_2251 are separated by 119 nucleotidesShewana3_2251 and Shewana3_2252 are separated by 104 nucleotides Shewana3_2249: Shewana3_2249 - methyltransferase type 12 (RefSeq), at 2,710,401 to 2,711,054 _2249 Shewana3_2250: Shewana3_2250 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 2,711,588 to 2,712,895 _2250 Shewana3_2251: Shewana3_2251 - DNA polymerase III, epsilon subunit (RefSeq), at 2,713,015 to 2,713,704 _2251 Shewana3_2252: Shewana3_2252 - LacI family transcription regulator (RefSeq), at 2,713,809 to 2,714,849 _2252 Position (kb) 2711 2712 2713Strain fitness (log2 ratio) -2 -1 0 1at 2710.777 kb on - strand, within Shewana3_2249at 2710.837 kb on + strand, within Shewana3_2249at 2710.863 kb on + strand, within Shewana3_2249at 2711.063 kb on + strandat 2711.063 kb on + strandat 2711.063 kb on + strandat 2711.063 kb on + strandat 2711.200 kb on + strandat 2711.609 kb on - strandat 2711.652 kb on - strandat 2711.689 kb on + strandat 2711.689 kb on + strandat 2712.294 kb on - strand, within Shewana3_2250at 2712.682 kb on - strand, within Shewana3_2250at 2712.762 kb on + strand, within Shewana3_2250at 2713.259 kb on + strand, within Shewana3_2251at 2713.301 kb on + strand, within Shewana3_2251at 2713.568 kb on + strand, within Shewana3_2251at 2713.709 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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2,710,777 - Shewana3_2249 0.57 -2.2
2,710,837 + Shewana3_2249 0.67 +0.4
2,710,863 + Shewana3_2249 0.71 +0.4
2,711,063 + +0.4
2,711,063 + -0.2
2,711,063 + -0.6
2,711,063 + +1.4
2,711,200 + -2.0
2,711,609 - -2.0
2,711,652 - +1.4
2,711,689 + -1.6
2,711,689 + -1.2
2,712,294 - Shewana3_2250 0.54 -1.2
2,712,682 - Shewana3_2250 0.84 -1.6
2,712,762 + Shewana3_2250 0.90 -0.2
2,713,259 + Shewana3_2251 0.35 +1.2
2,713,301 + Shewana3_2251 0.41 -1.4
2,713,568 + Shewana3_2251 0.80 -0.9
2,713,709 + +0.9

Or see this region's nucleotide sequence