Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2225

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2224 and Shewana3_2225 overlap by 4 nucleotidesShewana3_2225 and Shewana3_2226 are separated by 57 nucleotidesShewana3_2226 and Shewana3_2227 are separated by 240 nucleotides Shewana3_2224: Shewana3_2224 - EmrB/QacA family drug resistance transporter (RefSeq), at 2,673,518 to 2,675,098 _2224 Shewana3_2225: Shewana3_2225 - secretion protein HlyD family protein (RefSeq), at 2,675,095 to 2,676,150 _2225 Shewana3_2226: Shewana3_2226 - MarR family transcriptional regulator (RefSeq), at 2,676,208 to 2,676,642 _2226 Shewana3_2227: Shewana3_2227 - diguanylate cyclase (RefSeq), at 2,676,883 to 2,677,911 _2227 Position (kb) 2675 2676 2677Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2674.123 kb on - strand, within Shewana3_2224at 2674.139 kb on - strand, within Shewana3_2224at 2674.485 kb on + strand, within Shewana3_2224at 2674.649 kb on + strand, within Shewana3_2224at 2674.750 kb on + strand, within Shewana3_2224at 2674.758 kb on - strand, within Shewana3_2224at 2674.758 kb on - strand, within Shewana3_2224at 2674.758 kb on - strand, within Shewana3_2224at 2674.758 kb on - strand, within Shewana3_2224at 2674.801 kb on + strand, within Shewana3_2224at 2674.855 kb on + strand, within Shewana3_2224at 2674.939 kb on + strand, within Shewana3_2224at 2675.371 kb on - strand, within Shewana3_2225at 2675.459 kb on - strand, within Shewana3_2225at 2675.529 kb on - strand, within Shewana3_2225at 2676.260 kb on - strand, within Shewana3_2226at 2676.292 kb on + strand, within Shewana3_2226at 2676.405 kb on + strand, within Shewana3_2226at 2676.418 kb on - strand, within Shewana3_2226at 2676.450 kb on + strand, within Shewana3_2226at 2676.491 kb on - strand, within Shewana3_2226at 2676.612 kb on - strandat 2677.065 kb on + strand, within Shewana3_2227at 2677.149 kb on + strand, within Shewana3_2227

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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2,674,123 - Shewana3_2224 0.38 +2.4
2,674,139 - Shewana3_2224 0.39 -1.0
2,674,485 + Shewana3_2224 0.61 +0.5
2,674,649 + Shewana3_2224 0.72 -0.1
2,674,750 + Shewana3_2224 0.78 -1.4
2,674,758 - Shewana3_2224 0.78 +0.2
2,674,758 - Shewana3_2224 0.78 +0.9
2,674,758 - Shewana3_2224 0.78 -0.5
2,674,758 - Shewana3_2224 0.78 +1.2
2,674,801 + Shewana3_2224 0.81 -0.6
2,674,855 + Shewana3_2224 0.85 -1.6
2,674,939 + Shewana3_2224 0.90 +0.8
2,675,371 - Shewana3_2225 0.26 +1.4
2,675,459 - Shewana3_2225 0.34 -2.9
2,675,529 - Shewana3_2225 0.41 -2.0
2,676,260 - Shewana3_2226 0.12 +1.0
2,676,292 + Shewana3_2226 0.19 +0.7
2,676,405 + Shewana3_2226 0.45 +0.4
2,676,418 - Shewana3_2226 0.48 -2.5
2,676,450 + Shewana3_2226 0.56 +0.4
2,676,491 - Shewana3_2226 0.65 +3.2
2,676,612 - -0.9
2,677,065 + Shewana3_2227 0.18 +0.4
2,677,149 + Shewana3_2227 0.26 +0.6

Or see this region's nucleotide sequence