Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2224 and Shewana3_2225 overlap by 4 nucleotides Shewana3_2225 and Shewana3_2226 are separated by 57 nucleotides Shewana3_2226 and Shewana3_2227 are separated by 240 nucleotides
Shewana3_2224: Shewana3_2224 - EmrB/QacA family drug resistance transporter (RefSeq), at 2,673,518 to 2,675,098
_2224
Shewana3_2225: Shewana3_2225 - secretion protein HlyD family protein (RefSeq), at 2,675,095 to 2,676,150
_2225
Shewana3_2226: Shewana3_2226 - MarR family transcriptional regulator (RefSeq), at 2,676,208 to 2,676,642
_2226
Shewana3_2227: Shewana3_2227 - diguanylate cyclase (RefSeq), at 2,676,883 to 2,677,911
_2227
Position (kb)
2675
2676
2677 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2674.123 kb on - strand, within Shewana3_2224 at 2674.139 kb on - strand, within Shewana3_2224 at 2674.485 kb on + strand, within Shewana3_2224 at 2674.649 kb on + strand, within Shewana3_2224 at 2674.750 kb on + strand, within Shewana3_2224 at 2674.758 kb on - strand, within Shewana3_2224 at 2674.758 kb on - strand, within Shewana3_2224 at 2674.758 kb on - strand, within Shewana3_2224 at 2674.758 kb on - strand, within Shewana3_2224 at 2674.801 kb on + strand, within Shewana3_2224 at 2674.855 kb on + strand, within Shewana3_2224 at 2674.939 kb on + strand, within Shewana3_2224 at 2675.371 kb on - strand, within Shewana3_2225 at 2675.459 kb on - strand, within Shewana3_2225 at 2675.529 kb on - strand, within Shewana3_2225 at 2676.260 kb on - strand, within Shewana3_2226 at 2676.292 kb on + strand, within Shewana3_2226 at 2676.405 kb on + strand, within Shewana3_2226 at 2676.418 kb on - strand, within Shewana3_2226 at 2676.450 kb on + strand, within Shewana3_2226 at 2676.491 kb on - strand, within Shewana3_2226 at 2676.612 kb on - strand at 2677.065 kb on + strand, within Shewana3_2227 at 2677.149 kb on + strand, within Shewana3_2227
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,674,123 - Shewana3_2224 0.38 +2.4 2,674,139 - Shewana3_2224 0.39 -1.0 2,674,485 + Shewana3_2224 0.61 +0.5 2,674,649 + Shewana3_2224 0.72 -0.1 2,674,750 + Shewana3_2224 0.78 -1.4 2,674,758 - Shewana3_2224 0.78 +0.2 2,674,758 - Shewana3_2224 0.78 +0.9 2,674,758 - Shewana3_2224 0.78 -0.5 2,674,758 - Shewana3_2224 0.78 +1.2 2,674,801 + Shewana3_2224 0.81 -0.6 2,674,855 + Shewana3_2224 0.85 -1.6 2,674,939 + Shewana3_2224 0.90 +0.8 2,675,371 - Shewana3_2225 0.26 +1.4 2,675,459 - Shewana3_2225 0.34 -2.9 2,675,529 - Shewana3_2225 0.41 -2.0 2,676,260 - Shewana3_2226 0.12 +1.0 2,676,292 + Shewana3_2226 0.19 +0.7 2,676,405 + Shewana3_2226 0.45 +0.4 2,676,418 - Shewana3_2226 0.48 -2.5 2,676,450 + Shewana3_2226 0.56 +0.4 2,676,491 - Shewana3_2226 0.65 +3.2 2,676,612 - -0.9 2,677,065 + Shewana3_2227 0.18 +0.4 2,677,149 + Shewana3_2227 0.26 +0.6
Or see this region's nucleotide sequence