Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2216

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2214 and Shewana3_2215 are separated by 0 nucleotidesShewana3_2215 and Shewana3_2216 are separated by 0 nucleotidesShewana3_2216 and Shewana3_2217 are separated by 5 nucleotidesShewana3_2217 and Shewana3_2218 are separated by 14 nucleotides Shewana3_2214: Shewana3_2214 - chemoreceptor glutamine deamidase CheD (RefSeq), at 2,660,806 to 2,661,426 _2214 Shewana3_2215: Shewana3_2215 - MCP methyltransferase, CheR-type (RefSeq), at 2,661,427 to 2,662,257 _2215 Shewana3_2216: Shewana3_2216 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,662,258 to 2,664,231 _2216 Shewana3_2217: Shewana3_2217 - CheW protein (RefSeq), at 2,664,237 to 2,664,749 _2217 Shewana3_2218: Shewana3_2218 - CheA signal transduction histidine kinases (RefSeq), at 2,664,764 to 2,666,878 _2218 Position (kb) 2662 2663 2664 2665Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2661.286 kb on + strand, within Shewana3_2214at 2661.286 kb on + strand, within Shewana3_2214at 2661.294 kb on - strand, within Shewana3_2214at 2661.294 kb on - strand, within Shewana3_2214at 2661.294 kb on - strand, within Shewana3_2214at 2661.709 kb on + strand, within Shewana3_2215at 2661.722 kb on - strand, within Shewana3_2215at 2661.816 kb on - strand, within Shewana3_2215at 2661.910 kb on - strand, within Shewana3_2215at 2661.914 kb on + strand, within Shewana3_2215at 2662.143 kb on + strand, within Shewana3_2215at 2662.199 kb on + strandat 2662.199 kb on + strandat 2662.413 kb on - strandat 2662.741 kb on - strand, within Shewana3_2216at 2662.758 kb on + strand, within Shewana3_2216at 2663.053 kb on - strand, within Shewana3_2216at 2663.067 kb on + strand, within Shewana3_2216at 2663.084 kb on - strand, within Shewana3_2216at 2663.222 kb on - strand, within Shewana3_2216at 2663.237 kb on + strand, within Shewana3_2216at 2663.490 kb on - strand, within Shewana3_2216at 2663.779 kb on - strand, within Shewana3_2216at 2663.951 kb on - strand, within Shewana3_2216at 2664.059 kb on - strandat 2664.134 kb on - strandat 2664.141 kb on - strandat 2664.288 kb on + strandat 2664.518 kb on - strand, within Shewana3_2217at 2664.548 kb on + strand, within Shewana3_2217at 2664.669 kb on + strand, within Shewana3_2217at 2664.709 kb on + strandat 2664.717 kb on - strandat 2664.889 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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2,661,286 + Shewana3_2214 0.77 -0.9
2,661,286 + Shewana3_2214 0.77 +0.9
2,661,294 - Shewana3_2214 0.79 -0.6
2,661,294 - Shewana3_2214 0.79 +0.8
2,661,294 - Shewana3_2214 0.79 -0.6
2,661,709 + Shewana3_2215 0.34 +0.2
2,661,722 - Shewana3_2215 0.35 +1.6
2,661,816 - Shewana3_2215 0.47 +0.7
2,661,910 - Shewana3_2215 0.58 -0.2
2,661,914 + Shewana3_2215 0.59 -0.2
2,662,143 + Shewana3_2215 0.86 +0.4
2,662,199 + -0.2
2,662,199 + -3.2
2,662,413 - -1.6
2,662,741 - Shewana3_2216 0.24 +0.4
2,662,758 + Shewana3_2216 0.25 +0.0
2,663,053 - Shewana3_2216 0.40 +0.1
2,663,067 + Shewana3_2216 0.41 +0.0
2,663,084 - Shewana3_2216 0.42 +2.2
2,663,222 - Shewana3_2216 0.49 +1.1
2,663,237 + Shewana3_2216 0.50 -0.2
2,663,490 - Shewana3_2216 0.62 -2.0
2,663,779 - Shewana3_2216 0.77 +0.3
2,663,951 - Shewana3_2216 0.86 +1.1
2,664,059 - -0.9
2,664,134 - -0.2
2,664,141 - +0.5
2,664,288 + -0.1
2,664,518 - Shewana3_2217 0.55 -1.9
2,664,548 + Shewana3_2217 0.61 +1.8
2,664,669 + Shewana3_2217 0.84 -0.9
2,664,709 + -0.2
2,664,717 - +0.4
2,664,889 - +1.0

Or see this region's nucleotide sequence