Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2214 and Shewana3_2215 are separated by 0 nucleotides Shewana3_2215 and Shewana3_2216 are separated by 0 nucleotides Shewana3_2216 and Shewana3_2217 are separated by 5 nucleotides Shewana3_2217 and Shewana3_2218 are separated by 14 nucleotides
Shewana3_2214: Shewana3_2214 - chemoreceptor glutamine deamidase CheD (RefSeq), at 2,660,806 to 2,661,426
_2214
Shewana3_2215: Shewana3_2215 - MCP methyltransferase, CheR-type (RefSeq), at 2,661,427 to 2,662,257
_2215
Shewana3_2216: Shewana3_2216 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,662,258 to 2,664,231
_2216
Shewana3_2217: Shewana3_2217 - CheW protein (RefSeq), at 2,664,237 to 2,664,749
_2217
Shewana3_2218: Shewana3_2218 - CheA signal transduction histidine kinases (RefSeq), at 2,664,764 to 2,666,878
_2218
Position (kb)
2662
2663
2664
2665 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2661.286 kb on + strand, within Shewana3_2214 at 2661.286 kb on + strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.294 kb on - strand, within Shewana3_2214 at 2661.709 kb on + strand, within Shewana3_2215 at 2661.722 kb on - strand, within Shewana3_2215 at 2661.816 kb on - strand, within Shewana3_2215 at 2661.910 kb on - strand, within Shewana3_2215 at 2661.914 kb on + strand, within Shewana3_2215 at 2662.143 kb on + strand, within Shewana3_2215 at 2662.199 kb on + strand at 2662.199 kb on + strand at 2662.413 kb on - strand at 2662.741 kb on - strand, within Shewana3_2216 at 2662.758 kb on + strand, within Shewana3_2216 at 2663.053 kb on - strand, within Shewana3_2216 at 2663.067 kb on + strand, within Shewana3_2216 at 2663.084 kb on - strand, within Shewana3_2216 at 2663.222 kb on - strand, within Shewana3_2216 at 2663.237 kb on + strand, within Shewana3_2216 at 2663.490 kb on - strand, within Shewana3_2216 at 2663.779 kb on - strand, within Shewana3_2216 at 2663.951 kb on - strand, within Shewana3_2216 at 2664.059 kb on - strand at 2664.134 kb on - strand at 2664.141 kb on - strand at 2664.288 kb on + strand at 2664.518 kb on - strand, within Shewana3_2217 at 2664.548 kb on + strand, within Shewana3_2217 at 2664.669 kb on + strand, within Shewana3_2217 at 2664.709 kb on + strand at 2664.717 kb on - strand at 2664.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,661,286 + Shewana3_2214 0.77 -0.9 2,661,286 + Shewana3_2214 0.77 +0.9 2,661,294 - Shewana3_2214 0.79 -0.6 2,661,294 - Shewana3_2214 0.79 +0.8 2,661,294 - Shewana3_2214 0.79 -0.6 2,661,709 + Shewana3_2215 0.34 +0.2 2,661,722 - Shewana3_2215 0.35 +1.6 2,661,816 - Shewana3_2215 0.47 +0.7 2,661,910 - Shewana3_2215 0.58 -0.2 2,661,914 + Shewana3_2215 0.59 -0.2 2,662,143 + Shewana3_2215 0.86 +0.4 2,662,199 + -0.2 2,662,199 + -3.2 2,662,413 - -1.6 2,662,741 - Shewana3_2216 0.24 +0.4 2,662,758 + Shewana3_2216 0.25 +0.0 2,663,053 - Shewana3_2216 0.40 +0.1 2,663,067 + Shewana3_2216 0.41 +0.0 2,663,084 - Shewana3_2216 0.42 +2.2 2,663,222 - Shewana3_2216 0.49 +1.1 2,663,237 + Shewana3_2216 0.50 -0.2 2,663,490 - Shewana3_2216 0.62 -2.0 2,663,779 - Shewana3_2216 0.77 +0.3 2,663,951 - Shewana3_2216 0.86 +1.1 2,664,059 - -0.9 2,664,134 - -0.2 2,664,141 - +0.5 2,664,288 + -0.1 2,664,518 - Shewana3_2217 0.55 -1.9 2,664,548 + Shewana3_2217 0.61 +1.8 2,664,669 + Shewana3_2217 0.84 -0.9 2,664,709 + -0.2 2,664,717 - +0.4 2,664,889 - +1.0
Or see this region's nucleotide sequence