Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2130

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2129 and Shewana3_2130 are separated by 9 nucleotidesShewana3_2130 and Shewana3_2131 are separated by 3 nucleotides Shewana3_2129: Shewana3_2129 - dihydrolipoamide acetyltransferase (RefSeq), at 2,553,896 to 2,555,491 _2129 Shewana3_2130: Shewana3_2130 - transketolase, central region (RefSeq), at 2,555,501 to 2,556,478 _2130 Shewana3_2131: Shewana3_2131 - dehydrogenase, E1 component (RefSeq), at 2,556,482 to 2,557,660 _2131 Position (kb) 2555 2556 2557Strain fitness (log2 ratio) -2 -1 0 1 2at 2554.593 kb on + strand, within Shewana3_2129at 2554.611 kb on - strand, within Shewana3_2129at 2554.688 kb on + strand, within Shewana3_2129at 2554.701 kb on - strand, within Shewana3_2129at 2554.811 kb on + strand, within Shewana3_2129at 2554.813 kb on - strand, within Shewana3_2129at 2554.819 kb on - strand, within Shewana3_2129at 2555.268 kb on + strand, within Shewana3_2129at 2555.897 kb on - strand, within Shewana3_2130at 2556.017 kb on - strand, within Shewana3_2130at 2556.027 kb on - strand, within Shewana3_2130at 2556.027 kb on - strand, within Shewana3_2130at 2556.027 kb on - strand, within Shewana3_2130at 2556.133 kb on + strand, within Shewana3_2130at 2556.156 kb on - strand, within Shewana3_2130at 2556.410 kb on + strandat 2556.918 kb on - strand, within Shewana3_2131at 2557.072 kb on - strand, within Shewana3_2131at 2557.134 kb on - strand, within Shewana3_2131at 2557.157 kb on + strand, within Shewana3_2131at 2557.317 kb on + strand, within Shewana3_2131at 2557.325 kb on - strand, within Shewana3_2131

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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2,554,593 + Shewana3_2129 0.44 +1.5
2,554,611 - Shewana3_2129 0.45 +1.9
2,554,688 + Shewana3_2129 0.50 +0.8
2,554,701 - Shewana3_2129 0.50 +0.5
2,554,811 + Shewana3_2129 0.57 +1.5
2,554,813 - Shewana3_2129 0.57 -0.7
2,554,819 - Shewana3_2129 0.58 -1.5
2,555,268 + Shewana3_2129 0.86 -0.1
2,555,897 - Shewana3_2130 0.40 -2.5
2,556,017 - Shewana3_2130 0.53 -2.1
2,556,027 - Shewana3_2130 0.54 -0.1
2,556,027 - Shewana3_2130 0.54 -0.1
2,556,027 - Shewana3_2130 0.54 -0.2
2,556,133 + Shewana3_2130 0.65 -1.9
2,556,156 - Shewana3_2130 0.67 -0.1
2,556,410 + +1.5
2,556,918 - Shewana3_2131 0.37 -0.9
2,557,072 - Shewana3_2131 0.50 -0.1
2,557,134 - Shewana3_2131 0.55 -0.1
2,557,157 + Shewana3_2131 0.57 -0.1
2,557,317 + Shewana3_2131 0.71 +0.5
2,557,325 - Shewana3_2131 0.72 -1.5

Or see this region's nucleotide sequence