Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1965

Experiment: Chloride 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1964 and Shewana3_1965 are separated by 165 nucleotidesShewana3_1965 and Shewana3_1966 are separated by 124 nucleotidesShewana3_1966 and Shewana3_1967 are separated by 187 nucleotides Shewana3_1964: Shewana3_1964 - signal peptide peptidase SppA, 67K type (RefSeq), at 2,336,874 to 2,338,718 _1964 Shewana3_1965: Shewana3_1965 - 2,4-dienoyl-CoA reductase (RefSeq), at 2,338,884 to 2,340,902 _1965 Shewana3_1966: Shewana3_1966 - hypothetical protein (RefSeq), at 2,341,027 to 2,341,482 _1966 Shewana3_1967: Shewana3_1967 - ferredoxin (RefSeq), at 2,341,670 to 2,342,080 _1967 Position (kb) 2338 2339 2340 2341Strain fitness (log2 ratio) -2 -1 0 1at 2338.023 kb on + strand, within Shewana3_1964at 2338.094 kb on - strand, within Shewana3_1964at 2338.317 kb on + strand, within Shewana3_1964at 2338.385 kb on - strand, within Shewana3_1964at 2339.364 kb on - strand, within Shewana3_1965at 2340.020 kb on + strand, within Shewana3_1965at 2340.588 kb on + strand, within Shewana3_1965at 2340.993 kb on + strandat 2340.998 kb on + strandat 2341.584 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
remove
2,338,023 + Shewana3_1964 0.62 +0.4
2,338,094 - Shewana3_1964 0.66 -0.3
2,338,317 + Shewana3_1964 0.78 +0.4
2,338,385 - Shewana3_1964 0.82 +0.4
2,339,364 - Shewana3_1965 0.24 +1.4
2,340,020 + Shewana3_1965 0.56 -0.9
2,340,588 + Shewana3_1965 0.84 -1.9
2,340,993 + +1.4
2,340,998 + -0.2
2,341,584 - +1.4

Or see this region's nucleotide sequence