Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1964 and Shewana3_1965 are separated by 165 nucleotides Shewana3_1965 and Shewana3_1966 are separated by 124 nucleotides Shewana3_1966 and Shewana3_1967 are separated by 187 nucleotides
Shewana3_1964: Shewana3_1964 - signal peptide peptidase SppA, 67K type (RefSeq), at 2,336,874 to 2,338,718
_1964
Shewana3_1965: Shewana3_1965 - 2,4-dienoyl-CoA reductase (RefSeq), at 2,338,884 to 2,340,902
_1965
Shewana3_1966: Shewana3_1966 - hypothetical protein (RefSeq), at 2,341,027 to 2,341,482
_1966
Shewana3_1967: Shewana3_1967 - ferredoxin (RefSeq), at 2,341,670 to 2,342,080
_1967
Position (kb)
2338
2339
2340
2341 Strain fitness (log2 ratio)
-2
-1
0
1 at 2338.023 kb on + strand, within Shewana3_1964 at 2338.094 kb on - strand, within Shewana3_1964 at 2338.317 kb on + strand, within Shewana3_1964 at 2338.385 kb on - strand, within Shewana3_1964 at 2339.364 kb on - strand, within Shewana3_1965 at 2340.020 kb on + strand, within Shewana3_1965 at 2340.588 kb on + strand, within Shewana3_1965 at 2340.993 kb on + strand at 2340.998 kb on + strand at 2341.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,338,023 + Shewana3_1964 0.62 +0.4 2,338,094 - Shewana3_1964 0.66 -0.3 2,338,317 + Shewana3_1964 0.78 +0.4 2,338,385 - Shewana3_1964 0.82 +0.4 2,339,364 - Shewana3_1965 0.24 +1.4 2,340,020 + Shewana3_1965 0.56 -0.9 2,340,588 + Shewana3_1965 0.84 -1.9 2,340,993 + +1.4 2,340,998 + -0.2 2,341,584 - +1.4
Or see this region's nucleotide sequence