Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1936

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1935 and Shewana3_1936 are separated by 432 nucleotidesShewana3_1936 and Shewana3_1937 are separated by 2 nucleotides Shewana3_1935: Shewana3_1935 - hypothetical protein (RefSeq), at 2,300,304 to 2,301,413 _1935 Shewana3_1936: Shewana3_1936 - thiamine biosynthesis protein ThiC (RefSeq), at 2,301,846 to 2,304,008 _1936 Shewana3_1937: Shewana3_1937 - thiamine-phosphate pyrophosphorylase (RefSeq), at 2,304,011 to 2,305,693 _1937 Position (kb) 2301 2302 2303 2304 2305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2301.007 kb on - strand, within Shewana3_1935at 2301.084 kb on + strand, within Shewana3_1935at 2301.388 kb on - strandat 2301.605 kb on + strandat 2301.658 kb on - strandat 2301.722 kb on + strandat 2301.729 kb on - strandat 2301.792 kb on + strandat 2301.889 kb on + strandat 2301.946 kb on + strandat 2301.947 kb on + strandat 2301.954 kb on - strandat 2301.955 kb on - strandat 2302.070 kb on + strand, within Shewana3_1936at 2302.078 kb on - strand, within Shewana3_1936at 2302.101 kb on + strand, within Shewana3_1936at 2302.118 kb on + strand, within Shewana3_1936at 2302.118 kb on + strand, within Shewana3_1936at 2302.126 kb on - strand, within Shewana3_1936at 2302.152 kb on + strand, within Shewana3_1936at 2302.152 kb on + strand, within Shewana3_1936at 2302.463 kb on - strandat 2302.539 kb on - strand, within Shewana3_1936at 2302.669 kb on + strand, within Shewana3_1936at 2302.766 kb on + strand, within Shewana3_1936at 2302.946 kb on + strand, within Shewana3_1936at 2303.085 kb on + strand, within Shewana3_1936at 2303.178 kb on + strand, within Shewana3_1936at 2303.209 kb on + strand, within Shewana3_1936at 2303.685 kb on + strand, within Shewana3_1936at 2303.689 kb on - strand, within Shewana3_1936at 2303.971 kb on - strandat 2303.971 kb on - strandat 2303.987 kb on + strandat 2304.105 kb on - strandat 2304.237 kb on - strand, within Shewana3_1937at 2304.237 kb on - strand, within Shewana3_1937at 2304.841 kb on + strand, within Shewana3_1937at 2304.886 kb on - strand, within Shewana3_1937at 2304.954 kb on + strand, within Shewana3_1937at 2304.962 kb on - strand, within Shewana3_1937

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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2,301,007 - Shewana3_1935 0.63 +1.4
2,301,084 + Shewana3_1935 0.70 +0.6
2,301,388 - +1.7
2,301,605 + +0.4
2,301,658 - +0.4
2,301,722 + +0.4
2,301,729 - -1.2
2,301,792 + -0.9
2,301,889 + +0.5
2,301,946 + +2.4
2,301,947 + -1.4
2,301,954 - -1.6
2,301,955 - -1.6
2,302,070 + Shewana3_1936 0.10 -1.2
2,302,078 - Shewana3_1936 0.11 -1.0
2,302,101 + Shewana3_1936 0.12 -0.2
2,302,118 + Shewana3_1936 0.13 -1.9
2,302,118 + Shewana3_1936 0.13 -0.6
2,302,126 - Shewana3_1936 0.13 +0.8
2,302,152 + Shewana3_1936 0.14 -0.6
2,302,152 + Shewana3_1936 0.14 -0.2
2,302,463 - +0.4
2,302,539 - Shewana3_1936 0.32 -0.5
2,302,669 + Shewana3_1936 0.38 +1.3
2,302,766 + Shewana3_1936 0.43 -0.6
2,302,946 + Shewana3_1936 0.51 +0.4
2,303,085 + Shewana3_1936 0.57 +0.1
2,303,178 + Shewana3_1936 0.62 +0.2
2,303,209 + Shewana3_1936 0.63 +0.4
2,303,685 + Shewana3_1936 0.85 +1.4
2,303,689 - Shewana3_1936 0.85 -1.2
2,303,971 - +0.4
2,303,971 - +1.4
2,303,987 + -2.8
2,304,105 - -2.4
2,304,237 - Shewana3_1937 0.13 -0.7
2,304,237 - Shewana3_1937 0.13 +0.2
2,304,841 + Shewana3_1937 0.49 +0.7
2,304,886 - Shewana3_1937 0.52 +0.4
2,304,954 + Shewana3_1937 0.56 -0.3
2,304,962 - Shewana3_1937 0.57 +0.4

Or see this region's nucleotide sequence