Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1935 and Shewana3_1936 are separated by 432 nucleotides Shewana3_1936 and Shewana3_1937 are separated by 2 nucleotides
Shewana3_1935: Shewana3_1935 - hypothetical protein (RefSeq), at 2,300,304 to 2,301,413
_1935
Shewana3_1936: Shewana3_1936 - thiamine biosynthesis protein ThiC (RefSeq), at 2,301,846 to 2,304,008
_1936
Shewana3_1937: Shewana3_1937 - thiamine-phosphate pyrophosphorylase (RefSeq), at 2,304,011 to 2,305,693
_1937
Position (kb)
2301
2302
2303
2304
2305 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2301.007 kb on - strand, within Shewana3_1935 at 2301.084 kb on + strand, within Shewana3_1935 at 2301.388 kb on - strand at 2301.605 kb on + strand at 2301.658 kb on - strand at 2301.722 kb on + strand at 2301.729 kb on - strand at 2301.792 kb on + strand at 2301.889 kb on + strand at 2301.946 kb on + strand at 2301.947 kb on + strand at 2301.954 kb on - strand at 2301.955 kb on - strand at 2302.070 kb on + strand, within Shewana3_1936 at 2302.078 kb on - strand, within Shewana3_1936 at 2302.101 kb on + strand, within Shewana3_1936 at 2302.118 kb on + strand, within Shewana3_1936 at 2302.118 kb on + strand, within Shewana3_1936 at 2302.126 kb on - strand, within Shewana3_1936 at 2302.152 kb on + strand, within Shewana3_1936 at 2302.152 kb on + strand, within Shewana3_1936 at 2302.463 kb on - strand at 2302.539 kb on - strand, within Shewana3_1936 at 2302.669 kb on + strand, within Shewana3_1936 at 2302.766 kb on + strand, within Shewana3_1936 at 2302.946 kb on + strand, within Shewana3_1936 at 2303.085 kb on + strand, within Shewana3_1936 at 2303.178 kb on + strand, within Shewana3_1936 at 2303.209 kb on + strand, within Shewana3_1936 at 2303.685 kb on + strand, within Shewana3_1936 at 2303.689 kb on - strand, within Shewana3_1936 at 2303.971 kb on - strand at 2303.971 kb on - strand at 2303.987 kb on + strand at 2304.105 kb on - strand at 2304.237 kb on - strand, within Shewana3_1937 at 2304.237 kb on - strand, within Shewana3_1937 at 2304.841 kb on + strand, within Shewana3_1937 at 2304.886 kb on - strand, within Shewana3_1937 at 2304.954 kb on + strand, within Shewana3_1937 at 2304.962 kb on - strand, within Shewana3_1937
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,301,007 - Shewana3_1935 0.63 +1.4 2,301,084 + Shewana3_1935 0.70 +0.6 2,301,388 - +1.7 2,301,605 + +0.4 2,301,658 - +0.4 2,301,722 + +0.4 2,301,729 - -1.2 2,301,792 + -0.9 2,301,889 + +0.5 2,301,946 + +2.4 2,301,947 + -1.4 2,301,954 - -1.6 2,301,955 - -1.6 2,302,070 + Shewana3_1936 0.10 -1.2 2,302,078 - Shewana3_1936 0.11 -1.0 2,302,101 + Shewana3_1936 0.12 -0.2 2,302,118 + Shewana3_1936 0.13 -1.9 2,302,118 + Shewana3_1936 0.13 -0.6 2,302,126 - Shewana3_1936 0.13 +0.8 2,302,152 + Shewana3_1936 0.14 -0.6 2,302,152 + Shewana3_1936 0.14 -0.2 2,302,463 - +0.4 2,302,539 - Shewana3_1936 0.32 -0.5 2,302,669 + Shewana3_1936 0.38 +1.3 2,302,766 + Shewana3_1936 0.43 -0.6 2,302,946 + Shewana3_1936 0.51 +0.4 2,303,085 + Shewana3_1936 0.57 +0.1 2,303,178 + Shewana3_1936 0.62 +0.2 2,303,209 + Shewana3_1936 0.63 +0.4 2,303,685 + Shewana3_1936 0.85 +1.4 2,303,689 - Shewana3_1936 0.85 -1.2 2,303,971 - +0.4 2,303,971 - +1.4 2,303,987 + -2.8 2,304,105 - -2.4 2,304,237 - Shewana3_1937 0.13 -0.7 2,304,237 - Shewana3_1937 0.13 +0.2 2,304,841 + Shewana3_1937 0.49 +0.7 2,304,886 - Shewana3_1937 0.52 +0.4 2,304,954 + Shewana3_1937 0.56 -0.3 2,304,962 - Shewana3_1937 0.57 +0.4
Or see this region's nucleotide sequence