Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1919 and Shewana3_1920 are separated by 10 nucleotides Shewana3_1920 and Shewana3_1921 are separated by 1 nucleotides Shewana3_1921 and Shewana3_1922 are separated by 215 nucleotides
Shewana3_1919: Shewana3_1919 - PqiA family integral membrane protein (RefSeq), at 2,280,935 to 2,282,218
_1919
Shewana3_1920: Shewana3_1920 - hypothetical protein (RefSeq), at 2,282,229 to 2,283,893
_1920
Shewana3_1921: Shewana3_1921 - hypothetical protein (RefSeq), at 2,283,895 to 2,284,494
_1921
Shewana3_1922: Shewana3_1922 - sodium/sulphate symporter (RefSeq), at 2,284,710 to 2,286,098
_1922
Position (kb)
2282
2283
2284 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2281.328 kb on - strand, within Shewana3_1919 at 2281.702 kb on - strand, within Shewana3_1919 at 2281.805 kb on - strand, within Shewana3_1919 at 2281.937 kb on + strand, within Shewana3_1919 at 2281.976 kb on - strand, within Shewana3_1919 at 2282.004 kb on - strand, within Shewana3_1919 at 2282.278 kb on + strand at 2282.724 kb on + strand, within Shewana3_1920 at 2282.724 kb on + strand, within Shewana3_1920 at 2282.732 kb on - strand, within Shewana3_1920 at 2282.764 kb on + strand, within Shewana3_1920 at 2282.782 kb on - strand, within Shewana3_1920 at 2282.806 kb on + strand, within Shewana3_1920 at 2282.938 kb on + strand, within Shewana3_1920 at 2282.987 kb on + strand, within Shewana3_1920 at 2283.186 kb on - strand, within Shewana3_1920 at 2283.191 kb on + strand, within Shewana3_1920 at 2283.353 kb on - strand, within Shewana3_1920 at 2283.565 kb on + strand, within Shewana3_1920 at 2283.702 kb on + strand, within Shewana3_1920 at 2283.777 kb on - strand at 2283.963 kb on - strand, within Shewana3_1921 at 2284.463 kb on + strand at 2284.463 kb on + strand at 2284.486 kb on + strand at 2284.588 kb on + strand at 2284.599 kb on + strand at 2284.707 kb on + strand at 2284.735 kb on + strand at 2284.776 kb on - strand at 2284.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,281,328 - Shewana3_1919 0.31 -0.2 2,281,702 - Shewana3_1919 0.60 -0.6 2,281,805 - Shewana3_1919 0.68 -0.6 2,281,937 + Shewana3_1919 0.78 +0.1 2,281,976 - Shewana3_1919 0.81 -0.6 2,282,004 - Shewana3_1919 0.83 +1.4 2,282,278 + -0.9 2,282,724 + Shewana3_1920 0.30 +2.6 2,282,724 + Shewana3_1920 0.30 +1.0 2,282,732 - Shewana3_1920 0.30 +2.0 2,282,764 + Shewana3_1920 0.32 +1.6 2,282,782 - Shewana3_1920 0.33 +0.9 2,282,806 + Shewana3_1920 0.35 -0.6 2,282,938 + Shewana3_1920 0.43 -2.3 2,282,987 + Shewana3_1920 0.46 -2.2 2,283,186 - Shewana3_1920 0.57 -1.3 2,283,191 + Shewana3_1920 0.58 +0.6 2,283,353 - Shewana3_1920 0.68 -0.6 2,283,565 + Shewana3_1920 0.80 -0.8 2,283,702 + Shewana3_1920 0.88 -1.5 2,283,777 - -0.9 2,283,963 - Shewana3_1921 0.11 +0.6 2,284,463 + +1.4 2,284,463 + +0.2 2,284,486 + -0.9 2,284,588 + -0.2 2,284,599 + -2.3 2,284,707 + -0.2 2,284,735 + -0.6 2,284,776 - +1.1 2,284,792 - +0.3
Or see this region's nucleotide sequence