Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1920

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1919 and Shewana3_1920 are separated by 10 nucleotidesShewana3_1920 and Shewana3_1921 are separated by 1 nucleotidesShewana3_1921 and Shewana3_1922 are separated by 215 nucleotides Shewana3_1919: Shewana3_1919 - PqiA family integral membrane protein (RefSeq), at 2,280,935 to 2,282,218 _1919 Shewana3_1920: Shewana3_1920 - hypothetical protein (RefSeq), at 2,282,229 to 2,283,893 _1920 Shewana3_1921: Shewana3_1921 - hypothetical protein (RefSeq), at 2,283,895 to 2,284,494 _1921 Shewana3_1922: Shewana3_1922 - sodium/sulphate symporter (RefSeq), at 2,284,710 to 2,286,098 _1922 Position (kb) 2282 2283 2284Strain fitness (log2 ratio) -2 -1 0 1 2at 2281.328 kb on - strand, within Shewana3_1919at 2281.702 kb on - strand, within Shewana3_1919at 2281.805 kb on - strand, within Shewana3_1919at 2281.937 kb on + strand, within Shewana3_1919at 2281.976 kb on - strand, within Shewana3_1919at 2282.004 kb on - strand, within Shewana3_1919at 2282.278 kb on + strandat 2282.724 kb on + strand, within Shewana3_1920at 2282.724 kb on + strand, within Shewana3_1920at 2282.732 kb on - strand, within Shewana3_1920at 2282.764 kb on + strand, within Shewana3_1920at 2282.782 kb on - strand, within Shewana3_1920at 2282.806 kb on + strand, within Shewana3_1920at 2282.938 kb on + strand, within Shewana3_1920at 2282.987 kb on + strand, within Shewana3_1920at 2283.186 kb on - strand, within Shewana3_1920at 2283.191 kb on + strand, within Shewana3_1920at 2283.353 kb on - strand, within Shewana3_1920at 2283.565 kb on + strand, within Shewana3_1920at 2283.702 kb on + strand, within Shewana3_1920at 2283.777 kb on - strandat 2283.963 kb on - strand, within Shewana3_1921at 2284.463 kb on + strandat 2284.463 kb on + strandat 2284.486 kb on + strandat 2284.588 kb on + strandat 2284.599 kb on + strandat 2284.707 kb on + strandat 2284.735 kb on + strandat 2284.776 kb on - strandat 2284.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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2,281,328 - Shewana3_1919 0.31 -0.2
2,281,702 - Shewana3_1919 0.60 -0.6
2,281,805 - Shewana3_1919 0.68 -0.6
2,281,937 + Shewana3_1919 0.78 +0.1
2,281,976 - Shewana3_1919 0.81 -0.6
2,282,004 - Shewana3_1919 0.83 +1.4
2,282,278 + -0.9
2,282,724 + Shewana3_1920 0.30 +2.6
2,282,724 + Shewana3_1920 0.30 +1.0
2,282,732 - Shewana3_1920 0.30 +2.0
2,282,764 + Shewana3_1920 0.32 +1.6
2,282,782 - Shewana3_1920 0.33 +0.9
2,282,806 + Shewana3_1920 0.35 -0.6
2,282,938 + Shewana3_1920 0.43 -2.3
2,282,987 + Shewana3_1920 0.46 -2.2
2,283,186 - Shewana3_1920 0.57 -1.3
2,283,191 + Shewana3_1920 0.58 +0.6
2,283,353 - Shewana3_1920 0.68 -0.6
2,283,565 + Shewana3_1920 0.80 -0.8
2,283,702 + Shewana3_1920 0.88 -1.5
2,283,777 - -0.9
2,283,963 - Shewana3_1921 0.11 +0.6
2,284,463 + +1.4
2,284,463 + +0.2
2,284,486 + -0.9
2,284,588 + -0.2
2,284,599 + -2.3
2,284,707 + -0.2
2,284,735 + -0.6
2,284,776 - +1.1
2,284,792 - +0.3

Or see this region's nucleotide sequence