Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1695 and Shewana3_1696 are separated by 102 nucleotides Shewana3_1696 and Shewana3_1697 are separated by 81 nucleotides Shewana3_1697 and Shewana3_1698 are separated by 209 nucleotides
Shewana3_1695: Shewana3_1695 - cupin 2 domain-containing protein (RefSeq), at 1,994,139 to 1,994,576
_1695
Shewana3_1696: Shewana3_1696 - hypothetical protein (RefSeq), at 1,994,679 to 1,995,053
_1696
Shewana3_1697: Shewana3_1697 - cupin 2 domain-containing protein (RefSeq), at 1,995,135 to 1,995,674
_1697
Shewana3_1698: Shewana3_1698 - AraC family transcriptional regulator (RefSeq), at 1,995,884 to 1,996,792
_1698
Position (kb)
1995
1996 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1994.319 kb on - strand, within Shewana3_1695 at 1994.530 kb on - strand, within Shewana3_1695 at 1994.783 kb on + strand, within Shewana3_1696 at 1994.812 kb on + strand, within Shewana3_1696 at 1994.965 kb on - strand, within Shewana3_1696 at 1995.049 kb on - strand at 1995.270 kb on + strand, within Shewana3_1697 at 1995.398 kb on + strand, within Shewana3_1697 at 1995.553 kb on + strand, within Shewana3_1697 at 1995.750 kb on - strand at 1996.072 kb on + strand, within Shewana3_1698 at 1996.080 kb on - strand, within Shewana3_1698 at 1996.088 kb on - strand, within Shewana3_1698 at 1996.546 kb on - strand, within Shewana3_1698
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,994,319 - Shewana3_1695 0.41 -2.3 1,994,530 - Shewana3_1695 0.89 +1.4 1,994,783 + Shewana3_1696 0.28 +2.8 1,994,812 + Shewana3_1696 0.35 -2.3 1,994,965 - Shewana3_1696 0.76 -0.6 1,995,049 - -1.8 1,995,270 + Shewana3_1697 0.25 -1.6 1,995,398 + Shewana3_1697 0.49 +2.7 1,995,553 + Shewana3_1697 0.77 -0.1 1,995,750 - -0.6 1,996,072 + Shewana3_1698 0.21 +0.3 1,996,080 - Shewana3_1698 0.22 -0.2 1,996,088 - Shewana3_1698 0.22 -2.3 1,996,546 - Shewana3_1698 0.73 +0.8
Or see this region's nucleotide sequence