Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1690

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1689 and Shewana3_1690 are separated by 688 nucleotidesShewana3_1690 and Shewana3_1691 are separated by 84 nucleotides Shewana3_1689: Shewana3_1689 - hypothetical protein (RefSeq), at 1,984,005 to 1,984,409 _1689 Shewana3_1690: Shewana3_1690 - protease domain-containing protein (RefSeq), at 1,985,098 to 1,989,000 _1690 Shewana3_1691: Shewana3_1691 - LysR family transcriptional regulator (RefSeq), at 1,989,085 to 1,989,966 _1691 Position (kb) 1985 1986 1987 1988 1989 1990Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1984.137 kb on + strand, within Shewana3_1689at 1984.145 kb on - strand, within Shewana3_1689at 1984.197 kb on + strand, within Shewana3_1689at 1984.337 kb on + strand, within Shewana3_1689at 1984.382 kb on + strandat 1984.672 kb on - strandat 1985.124 kb on + strandat 1985.576 kb on + strand, within Shewana3_1690at 1985.845 kb on + strand, within Shewana3_1690at 1985.876 kb on - strand, within Shewana3_1690at 1985.924 kb on + strand, within Shewana3_1690at 1986.056 kb on - strand, within Shewana3_1690at 1986.449 kb on - strand, within Shewana3_1690at 1986.466 kb on - strand, within Shewana3_1690at 1986.505 kb on - strand, within Shewana3_1690at 1986.515 kb on + strand, within Shewana3_1690at 1986.848 kb on + strand, within Shewana3_1690at 1986.852 kb on + strand, within Shewana3_1690at 1986.983 kb on - strand, within Shewana3_1690at 1986.985 kb on + strand, within Shewana3_1690at 1986.985 kb on + strand, within Shewana3_1690at 1987.098 kb on + strand, within Shewana3_1690at 1987.116 kb on - strand, within Shewana3_1690at 1987.376 kb on + strand, within Shewana3_1690at 1987.431 kb on - strand, within Shewana3_1690at 1987.543 kb on + strand, within Shewana3_1690at 1987.551 kb on - strand, within Shewana3_1690at 1987.637 kb on + strand, within Shewana3_1690at 1987.718 kb on + strand, within Shewana3_1690at 1987.733 kb on + strand, within Shewana3_1690at 1987.741 kb on - strand, within Shewana3_1690at 1987.766 kb on - strand, within Shewana3_1690at 1987.975 kb on - strand, within Shewana3_1690at 1988.086 kb on + strand, within Shewana3_1690at 1988.135 kb on - strand, within Shewana3_1690at 1988.301 kb on - strand, within Shewana3_1690at 1988.396 kb on - strand, within Shewana3_1690at 1988.409 kb on + strand, within Shewana3_1690at 1988.506 kb on + strand, within Shewana3_1690at 1988.516 kb on + strand, within Shewana3_1690at 1988.938 kb on + strandat 1989.439 kb on + strand, within Shewana3_1691at 1989.712 kb on - strand, within Shewana3_1691at 1989.876 kb on - strand, within Shewana3_1691at 1989.895 kb on - strandat 1989.895 kb on - strandat 1989.987 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,984,137 + Shewana3_1689 0.33 -3.8
1,984,145 - Shewana3_1689 0.35 +1.4
1,984,197 + Shewana3_1689 0.47 -0.9
1,984,337 + Shewana3_1689 0.82 -2.7
1,984,382 + -2.4
1,984,672 - +0.1
1,985,124 + +0.8
1,985,576 + Shewana3_1690 0.12 -0.1
1,985,845 + Shewana3_1690 0.19 +0.7
1,985,876 - Shewana3_1690 0.20 +0.1
1,985,924 + Shewana3_1690 0.21 -1.0
1,986,056 - Shewana3_1690 0.25 +0.1
1,986,449 - Shewana3_1690 0.35 +0.4
1,986,466 - Shewana3_1690 0.35 -0.2
1,986,505 - Shewana3_1690 0.36 +0.4
1,986,515 + Shewana3_1690 0.36 +1.4
1,986,848 + Shewana3_1690 0.45 -0.2
1,986,852 + Shewana3_1690 0.45 +0.3
1,986,983 - Shewana3_1690 0.48 -1.8
1,986,985 + Shewana3_1690 0.48 +1.4
1,986,985 + Shewana3_1690 0.48 +0.2
1,987,098 + Shewana3_1690 0.51 -1.6
1,987,116 - Shewana3_1690 0.52 +0.1
1,987,376 + Shewana3_1690 0.58 +0.4
1,987,431 - Shewana3_1690 0.60 +0.6
1,987,543 + Shewana3_1690 0.63 +0.1
1,987,551 - Shewana3_1690 0.63 -1.3
1,987,637 + Shewana3_1690 0.65 +1.0
1,987,718 + Shewana3_1690 0.67 -2.6
1,987,733 + Shewana3_1690 0.68 +1.4
1,987,741 - Shewana3_1690 0.68 +1.4
1,987,766 - Shewana3_1690 0.68 -2.8
1,987,975 - Shewana3_1690 0.74 +1.4
1,988,086 + Shewana3_1690 0.77 +1.1
1,988,135 - Shewana3_1690 0.78 -0.2
1,988,301 - Shewana3_1690 0.82 +2.2
1,988,396 - Shewana3_1690 0.84 +0.1
1,988,409 + Shewana3_1690 0.85 -0.2
1,988,506 + Shewana3_1690 0.87 +1.4
1,988,516 + Shewana3_1690 0.88 +0.8
1,988,938 + -2.8
1,989,439 + Shewana3_1691 0.40 +2.1
1,989,712 - Shewana3_1691 0.71 -0.3
1,989,876 - Shewana3_1691 0.90 +1.0
1,989,895 - -0.9
1,989,895 - -0.2
1,989,987 + +0.1

Or see this region's nucleotide sequence