Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1689 and Shewana3_1690 are separated by 688 nucleotides Shewana3_1690 and Shewana3_1691 are separated by 84 nucleotides
Shewana3_1689: Shewana3_1689 - hypothetical protein (RefSeq), at 1,984,005 to 1,984,409
_1689
Shewana3_1690: Shewana3_1690 - protease domain-containing protein (RefSeq), at 1,985,098 to 1,989,000
_1690
Shewana3_1691: Shewana3_1691 - LysR family transcriptional regulator (RefSeq), at 1,989,085 to 1,989,966
_1691
Position (kb)
1985
1986
1987
1988
1989
1990 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1984.137 kb on + strand, within Shewana3_1689 at 1984.145 kb on - strand, within Shewana3_1689 at 1984.197 kb on + strand, within Shewana3_1689 at 1984.337 kb on + strand, within Shewana3_1689 at 1984.382 kb on + strand at 1984.672 kb on - strand at 1985.124 kb on + strand at 1985.576 kb on + strand, within Shewana3_1690 at 1985.845 kb on + strand, within Shewana3_1690 at 1985.876 kb on - strand, within Shewana3_1690 at 1985.924 kb on + strand, within Shewana3_1690 at 1986.056 kb on - strand, within Shewana3_1690 at 1986.449 kb on - strand, within Shewana3_1690 at 1986.466 kb on - strand, within Shewana3_1690 at 1986.505 kb on - strand, within Shewana3_1690 at 1986.515 kb on + strand, within Shewana3_1690 at 1986.848 kb on + strand, within Shewana3_1690 at 1986.852 kb on + strand, within Shewana3_1690 at 1986.983 kb on - strand, within Shewana3_1690 at 1986.985 kb on + strand, within Shewana3_1690 at 1986.985 kb on + strand, within Shewana3_1690 at 1987.098 kb on + strand, within Shewana3_1690 at 1987.116 kb on - strand, within Shewana3_1690 at 1987.376 kb on + strand, within Shewana3_1690 at 1987.431 kb on - strand, within Shewana3_1690 at 1987.543 kb on + strand, within Shewana3_1690 at 1987.551 kb on - strand, within Shewana3_1690 at 1987.637 kb on + strand, within Shewana3_1690 at 1987.718 kb on + strand, within Shewana3_1690 at 1987.733 kb on + strand, within Shewana3_1690 at 1987.741 kb on - strand, within Shewana3_1690 at 1987.766 kb on - strand, within Shewana3_1690 at 1987.975 kb on - strand, within Shewana3_1690 at 1988.086 kb on + strand, within Shewana3_1690 at 1988.135 kb on - strand, within Shewana3_1690 at 1988.301 kb on - strand, within Shewana3_1690 at 1988.396 kb on - strand, within Shewana3_1690 at 1988.409 kb on + strand, within Shewana3_1690 at 1988.506 kb on + strand, within Shewana3_1690 at 1988.516 kb on + strand, within Shewana3_1690 at 1988.938 kb on + strand at 1989.439 kb on + strand, within Shewana3_1691 at 1989.712 kb on - strand, within Shewana3_1691 at 1989.876 kb on - strand, within Shewana3_1691 at 1989.895 kb on - strand at 1989.895 kb on - strand at 1989.987 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,984,137 + Shewana3_1689 0.33 -3.8 1,984,145 - Shewana3_1689 0.35 +1.4 1,984,197 + Shewana3_1689 0.47 -0.9 1,984,337 + Shewana3_1689 0.82 -2.7 1,984,382 + -2.4 1,984,672 - +0.1 1,985,124 + +0.8 1,985,576 + Shewana3_1690 0.12 -0.1 1,985,845 + Shewana3_1690 0.19 +0.7 1,985,876 - Shewana3_1690 0.20 +0.1 1,985,924 + Shewana3_1690 0.21 -1.0 1,986,056 - Shewana3_1690 0.25 +0.1 1,986,449 - Shewana3_1690 0.35 +0.4 1,986,466 - Shewana3_1690 0.35 -0.2 1,986,505 - Shewana3_1690 0.36 +0.4 1,986,515 + Shewana3_1690 0.36 +1.4 1,986,848 + Shewana3_1690 0.45 -0.2 1,986,852 + Shewana3_1690 0.45 +0.3 1,986,983 - Shewana3_1690 0.48 -1.8 1,986,985 + Shewana3_1690 0.48 +1.4 1,986,985 + Shewana3_1690 0.48 +0.2 1,987,098 + Shewana3_1690 0.51 -1.6 1,987,116 - Shewana3_1690 0.52 +0.1 1,987,376 + Shewana3_1690 0.58 +0.4 1,987,431 - Shewana3_1690 0.60 +0.6 1,987,543 + Shewana3_1690 0.63 +0.1 1,987,551 - Shewana3_1690 0.63 -1.3 1,987,637 + Shewana3_1690 0.65 +1.0 1,987,718 + Shewana3_1690 0.67 -2.6 1,987,733 + Shewana3_1690 0.68 +1.4 1,987,741 - Shewana3_1690 0.68 +1.4 1,987,766 - Shewana3_1690 0.68 -2.8 1,987,975 - Shewana3_1690 0.74 +1.4 1,988,086 + Shewana3_1690 0.77 +1.1 1,988,135 - Shewana3_1690 0.78 -0.2 1,988,301 - Shewana3_1690 0.82 +2.2 1,988,396 - Shewana3_1690 0.84 +0.1 1,988,409 + Shewana3_1690 0.85 -0.2 1,988,506 + Shewana3_1690 0.87 +1.4 1,988,516 + Shewana3_1690 0.88 +0.8 1,988,938 + -2.8 1,989,439 + Shewana3_1691 0.40 +2.1 1,989,712 - Shewana3_1691 0.71 -0.3 1,989,876 - Shewana3_1691 0.90 +1.0 1,989,895 - -0.9 1,989,895 - -0.2 1,989,987 + +0.1
Or see this region's nucleotide sequence