Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1657

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1656 and Shewana3_1657 are separated by 3 nucleotidesShewana3_1657 and Shewana3_1658 are separated by 370 nucleotides Shewana3_1656: Shewana3_1656 - dihydrodipicolinate synthase (RefSeq), at 1,946,279 to 1,947,163 _1656 Shewana3_1657: Shewana3_1657 - NlpB/DapX family lipoprotein (RefSeq), at 1,947,167 to 1,948,264 _1657 Shewana3_1658: Shewana3_1658 - RND family efflux transporter MFP subunit (RefSeq), at 1,948,635 to 1,949,717 _1658 Position (kb) 1947 1948 1949Strain fitness (log2 ratio) -3 -2 -1 0 1at 1946.174 kb on + strandat 1947.614 kb on + strand, within Shewana3_1657at 1947.959 kb on + strand, within Shewana3_1657at 1947.968 kb on + strand, within Shewana3_1657at 1948.700 kb on + strandat 1948.743 kb on - strandat 1948.785 kb on + strand, within Shewana3_1658at 1948.952 kb on + strand, within Shewana3_1658at 1949.071 kb on + strand, within Shewana3_1658at 1949.078 kb on - strand, within Shewana3_1658at 1949.150 kb on - strand, within Shewana3_1658at 1949.222 kb on - strand, within Shewana3_1658

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,946,174 + -3.0
1,947,614 + Shewana3_1657 0.41 -2.0
1,947,959 + Shewana3_1657 0.72 -1.7
1,947,968 + Shewana3_1657 0.73 -1.5
1,948,700 + -0.6
1,948,743 - -0.6
1,948,785 + Shewana3_1658 0.14 +0.4
1,948,952 + Shewana3_1658 0.29 +1.4
1,949,071 + Shewana3_1658 0.40 -0.1
1,949,078 - Shewana3_1658 0.41 -2.6
1,949,150 - Shewana3_1658 0.48 +0.4
1,949,222 - Shewana3_1658 0.54 +0.0

Or see this region's nucleotide sequence