Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1584

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0072 and Shewana3_R0073 are separated by 175 nucleotidesShewana3_R0073 and Shewana3_1584 are separated by 259 nucleotidesShewana3_1584 and cpdB are separated by 226 nucleotides Shewana3_R0072: Shewana3_R0072 - 23S ribosomal RNA (RefSeq), at 1,855,447 to 1,858,341 _R0072 Shewana3_R0073: Shewana3_R0073 - 5S ribosomal RNA (RefSeq), at 1,858,517 to 1,858,636 _R0073 Shewana3_1584: Shewana3_1584 - hypothetical protein (RefSeq), at 1,858,896 to 1,859,612 _1584 Shewana3_1585: cpdB - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (RefSeq), at 1,859,839 to 1,861,896 cpdB Position (kb) 1858 1859 1860Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1858.848 kb on + strandat 1859.008 kb on + strand, within Shewana3_1584at 1859.037 kb on - strand, within Shewana3_1584at 1859.054 kb on - strand, within Shewana3_1584at 1859.087 kb on + strand, within Shewana3_1584at 1859.281 kb on + strand, within Shewana3_1584at 1859.672 kb on + strandat 1859.711 kb on - strandat 1860.223 kb on + strand, within cpdBat 1860.233 kb on + strandat 1860.240 kb on - strand, within cpdBat 1860.265 kb on - strand, within cpdBat 1860.419 kb on + strand, within cpdBat 1860.557 kb on + strand, within cpdB

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,858,848 + -0.9
1,859,008 + Shewana3_1584 0.16 -2.8
1,859,037 - Shewana3_1584 0.20 -0.6
1,859,054 - Shewana3_1584 0.22 -0.2
1,859,087 + Shewana3_1584 0.27 +1.0
1,859,281 + Shewana3_1584 0.54 -2.4
1,859,672 + -0.2
1,859,711 - +1.4
1,860,223 + cpdB Shewana3_1585 0.19 +1.4
1,860,233 + +1.4
1,860,240 - cpdB Shewana3_1585 0.19 +0.3
1,860,265 - cpdB Shewana3_1585 0.21 +2.0
1,860,419 + cpdB Shewana3_1585 0.28 +3.8
1,860,557 + cpdB Shewana3_1585 0.35 +1.4

Or see this region's nucleotide sequence