Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1579

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1577 and Shewana3_1578 are separated by 142 nucleotidesShewana3_1578 and Shewana3_1579 are separated by 236 nucleotidesShewana3_1579 and Shewana3_1580 are separated by 578 nucleotides Shewana3_1577: Shewana3_1577 - exonuclease, RNase T and DNA polymerase III (RefSeq), at 1,846,418 to 1,847,104 _1577 Shewana3_1578: Shewana3_1578 - MarR family transcriptional regulator (RefSeq), at 1,847,247 to 1,847,672 _1578 Shewana3_1579: Shewana3_1579 - alcohol dehydrogenase (RefSeq), at 1,847,909 to 1,848,904 _1579 Shewana3_1580: Shewana3_1580 - hypothetical protein (RefSeq), at 1,849,483 to 1,850,082 _1580 Position (kb) 1847 1848 1849Strain fitness (log2 ratio) -2 -1 0 1 2at 1846.938 kb on + strand, within Shewana3_1577at 1846.944 kb on + strand, within Shewana3_1577at 1846.946 kb on - strand, within Shewana3_1577at 1847.067 kb on + strandat 1847.075 kb on - strandat 1847.479 kb on - strand, within Shewana3_1578at 1847.554 kb on + strand, within Shewana3_1578at 1847.605 kb on - strand, within Shewana3_1578at 1847.644 kb on - strandat 1847.962 kb on + strandat 1848.171 kb on + strand, within Shewana3_1579at 1848.179 kb on - strand, within Shewana3_1579at 1848.311 kb on + strand, within Shewana3_1579at 1848.387 kb on - strand, within Shewana3_1579at 1848.446 kb on - strand, within Shewana3_1579at 1848.744 kb on - strand, within Shewana3_1579at 1848.928 kb on + strandat 1849.040 kb on + strandat 1849.048 kb on - strandat 1849.140 kb on + strandat 1849.292 kb on - strandat 1849.362 kb on + strandat 1849.690 kb on - strand, within Shewana3_1580at 1849.763 kb on + strand, within Shewana3_1580

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,846,938 + Shewana3_1577 0.76 +0.3
1,846,944 + Shewana3_1577 0.77 -0.3
1,846,946 - Shewana3_1577 0.77 +2.2
1,847,067 + +1.4
1,847,075 - +1.4
1,847,479 - Shewana3_1578 0.54 +0.3
1,847,554 + Shewana3_1578 0.72 +1.4
1,847,605 - Shewana3_1578 0.84 -1.2
1,847,644 - -2.3
1,847,962 + -0.1
1,848,171 + Shewana3_1579 0.26 -0.4
1,848,179 - Shewana3_1579 0.27 -1.4
1,848,311 + Shewana3_1579 0.40 -1.8
1,848,387 - Shewana3_1579 0.48 -0.6
1,848,446 - Shewana3_1579 0.54 -0.6
1,848,744 - Shewana3_1579 0.84 -2.2
1,848,928 + +2.2
1,849,040 + -1.0
1,849,048 - -0.9
1,849,140 + +1.4
1,849,292 - -0.5
1,849,362 + -0.9
1,849,690 - Shewana3_1580 0.34 +0.4
1,849,763 + Shewana3_1580 0.47 -1.2

Or see this region's nucleotide sequence