Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1577 and Shewana3_1578 are separated by 142 nucleotides Shewana3_1578 and Shewana3_1579 are separated by 236 nucleotides Shewana3_1579 and Shewana3_1580 are separated by 578 nucleotides
Shewana3_1577: Shewana3_1577 - exonuclease, RNase T and DNA polymerase III (RefSeq), at 1,846,418 to 1,847,104
_1577
Shewana3_1578: Shewana3_1578 - MarR family transcriptional regulator (RefSeq), at 1,847,247 to 1,847,672
_1578
Shewana3_1579: Shewana3_1579 - alcohol dehydrogenase (RefSeq), at 1,847,909 to 1,848,904
_1579
Shewana3_1580: Shewana3_1580 - hypothetical protein (RefSeq), at 1,849,483 to 1,850,082
_1580
Position (kb)
1847
1848
1849 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1846.938 kb on + strand, within Shewana3_1577 at 1846.944 kb on + strand, within Shewana3_1577 at 1846.946 kb on - strand, within Shewana3_1577 at 1847.067 kb on + strand at 1847.075 kb on - strand at 1847.479 kb on - strand, within Shewana3_1578 at 1847.554 kb on + strand, within Shewana3_1578 at 1847.605 kb on - strand, within Shewana3_1578 at 1847.644 kb on - strand at 1847.962 kb on + strand at 1848.171 kb on + strand, within Shewana3_1579 at 1848.179 kb on - strand, within Shewana3_1579 at 1848.311 kb on + strand, within Shewana3_1579 at 1848.387 kb on - strand, within Shewana3_1579 at 1848.446 kb on - strand, within Shewana3_1579 at 1848.744 kb on - strand, within Shewana3_1579 at 1848.928 kb on + strand at 1849.040 kb on + strand at 1849.048 kb on - strand at 1849.140 kb on + strand at 1849.292 kb on - strand at 1849.362 kb on + strand at 1849.690 kb on - strand, within Shewana3_1580 at 1849.763 kb on + strand, within Shewana3_1580
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 1,846,938 + Shewana3_1577 0.76 +0.3 1,846,944 + Shewana3_1577 0.77 -0.3 1,846,946 - Shewana3_1577 0.77 +2.2 1,847,067 + +1.4 1,847,075 - +1.4 1,847,479 - Shewana3_1578 0.54 +0.3 1,847,554 + Shewana3_1578 0.72 +1.4 1,847,605 - Shewana3_1578 0.84 -1.2 1,847,644 - -2.3 1,847,962 + -0.1 1,848,171 + Shewana3_1579 0.26 -0.4 1,848,179 - Shewana3_1579 0.27 -1.4 1,848,311 + Shewana3_1579 0.40 -1.8 1,848,387 - Shewana3_1579 0.48 -0.6 1,848,446 - Shewana3_1579 0.54 -0.6 1,848,744 - Shewana3_1579 0.84 -2.2 1,848,928 + +2.2 1,849,040 + -1.0 1,849,048 - -0.9 1,849,140 + +1.4 1,849,292 - -0.5 1,849,362 + -0.9 1,849,690 - Shewana3_1580 0.34 +0.4 1,849,763 + Shewana3_1580 0.47 -1.2
Or see this region's nucleotide sequence