Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1551

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1549 and Shewana3_1550 are separated by 29 nucleotidesShewana3_1550 and Shewana3_1551 are separated by 56 nucleotidesShewana3_1551 and Shewana3_1552 are separated by 122 nucleotides Shewana3_1549: Shewana3_1549 - transposase (RefSeq), at 1,805,136 to 1,805,531 _1549 Shewana3_1550: Shewana3_1550 - integrase catalytic subunit (RefSeq), at 1,805,561 to 1,806,364 _1550 Shewana3_1551: Shewana3_1551 - phosphate acetyltransferase (RefSeq), at 1,806,421 to 1,808,574 _1551 Shewana3_1552: Shewana3_1552 - acetate kinase (RefSeq), at 1,808,697 to 1,809,896 _1552 Position (kb) 1806 1807 1808 1809Strain fitness (log2 ratio) -3 -2 -1 0 1at 1806.569 kb on - strandat 1806.576 kb on + strandat 1806.765 kb on + strand, within Shewana3_1551at 1806.782 kb on - strand, within Shewana3_1551at 1806.850 kb on - strand, within Shewana3_1551at 1807.351 kb on - strand, within Shewana3_1551at 1807.400 kb on - strand, within Shewana3_1551at 1807.462 kb on + strand, within Shewana3_1551at 1807.470 kb on - strand, within Shewana3_1551at 1807.560 kb on - strand, within Shewana3_1551at 1807.655 kb on + strand, within Shewana3_1551at 1807.663 kb on + strand, within Shewana3_1551at 1808.336 kb on + strand, within Shewana3_1551at 1808.349 kb on - strand, within Shewana3_1551at 1808.349 kb on - strand, within Shewana3_1551at 1808.640 kb on + strandat 1808.980 kb on - strand, within Shewana3_1552at 1809.022 kb on + strand, within Shewana3_1552at 1809.193 kb on - strand, within Shewana3_1552at 1809.365 kb on - strand, within Shewana3_1552at 1809.451 kb on + strand, within Shewana3_1552

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,806,569 - -2.1
1,806,576 + -0.6
1,806,765 + Shewana3_1551 0.16 +0.4
1,806,782 - Shewana3_1551 0.17 -0.6
1,806,850 - Shewana3_1551 0.20 -2.6
1,807,351 - Shewana3_1551 0.43 -0.2
1,807,400 - Shewana3_1551 0.45 -0.6
1,807,462 + Shewana3_1551 0.48 -0.2
1,807,470 - Shewana3_1551 0.49 +1.5
1,807,560 - Shewana3_1551 0.53 -2.4
1,807,655 + Shewana3_1551 0.57 +1.4
1,807,663 + Shewana3_1551 0.58 -1.6
1,808,336 + Shewana3_1551 0.89 +0.4
1,808,349 - Shewana3_1551 0.90 -2.1
1,808,349 - Shewana3_1551 0.90 -1.4
1,808,640 + -1.8
1,808,980 - Shewana3_1552 0.24 -1.6
1,809,022 + Shewana3_1552 0.27 -1.9
1,809,193 - Shewana3_1552 0.41 -3.6
1,809,365 - Shewana3_1552 0.56 +1.4
1,809,451 + Shewana3_1552 0.63 -2.2

Or see this region's nucleotide sequence