Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1525

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1523 and Shewana3_1524 are separated by 3 nucleotidesShewana3_1524 and Shewana3_1525 overlap by 8 nucleotidesShewana3_1525 and Shewana3_1526 are separated by 113 nucleotides Shewana3_1523: Shewana3_1523 - condensin subunit ScpA (RefSeq), at 1,774,047 to 1,774,835 _1523 Shewana3_1524: Shewana3_1524 - condensin subunit ScpB (RefSeq), at 1,774,839 to 1,775,435 _1524 Shewana3_1525: Shewana3_1525 - ribosomal large subunit pseudouridine synthase B (RefSeq), at 1,775,428 to 1,776,303 _1525 Shewana3_1526: Shewana3_1526 - hypothetical protein (RefSeq), at 1,776,417 to 1,777,379 _1526 Position (kb) 1775 1776 1777Strain fitness (log2 ratio) -3 -2 -1 0 1at 1774.517 kb on + strand, within Shewana3_1523at 1774.722 kb on + strand, within Shewana3_1523at 1774.730 kb on - strand, within Shewana3_1523at 1774.972 kb on - strand, within Shewana3_1524at 1775.002 kb on - strand, within Shewana3_1524at 1775.081 kb on + strand, within Shewana3_1524at 1775.122 kb on + strand, within Shewana3_1524at 1775.449 kb on + strandat 1775.674 kb on + strand, within Shewana3_1525at 1775.742 kb on - strand, within Shewana3_1525at 1775.759 kb on + strand, within Shewana3_1525at 1775.915 kb on + strand, within Shewana3_1525at 1776.107 kb on + strand, within Shewana3_1525at 1776.214 kb on + strand, within Shewana3_1525at 1776.216 kb on + strandat 1776.224 kb on - strandat 1776.251 kb on + strandat 1776.270 kb on + strandat 1776.740 kb on - strand, within Shewana3_1526at 1776.793 kb on - strand, within Shewana3_1526at 1776.820 kb on - strand, within Shewana3_1526

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,774,517 + Shewana3_1523 0.60 +1.4
1,774,722 + Shewana3_1523 0.86 -0.5
1,774,730 - Shewana3_1523 0.87 +0.2
1,774,972 - Shewana3_1524 0.22 +0.4
1,775,002 - Shewana3_1524 0.27 +1.4
1,775,081 + Shewana3_1524 0.41 -1.4
1,775,122 + Shewana3_1524 0.47 -3.4
1,775,449 + -0.1
1,775,674 + Shewana3_1525 0.28 -3.0
1,775,742 - Shewana3_1525 0.36 -0.0
1,775,759 + Shewana3_1525 0.38 -1.6
1,775,915 + Shewana3_1525 0.56 -3.5
1,776,107 + Shewana3_1525 0.78 -2.8
1,776,214 + Shewana3_1525 0.90 +0.1
1,776,216 + -1.8
1,776,224 - +1.4
1,776,251 + +1.4
1,776,270 + -1.6
1,776,740 - Shewana3_1526 0.34 +0.4
1,776,793 - Shewana3_1526 0.39 +0.4
1,776,820 - Shewana3_1526 0.42 +1.4

Or see this region's nucleotide sequence