Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1452

Experiment: Chloride 500 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1451 and Shewana3_1452 are separated by 158 nucleotidesShewana3_1452 and Shewana3_1453 overlap by 8 nucleotidesShewana3_1453 and Shewana3_1454 are separated by 93 nucleotides Shewana3_1451: Shewana3_1451 - sodium/proline symporter (RefSeq), at 1,682,588 to 1,684,039 _1451 Shewana3_1452: Shewana3_1452 - hypothetical protein (RefSeq), at 1,684,198 to 1,684,902 _1452 Shewana3_1453: Shewana3_1453 - RNA polymerase sigma factor (RefSeq), at 1,684,895 to 1,685,458 _1453 Shewana3_1454: Shewana3_1454 - hypothetical protein (RefSeq), at 1,685,552 to 1,687,213 _1454 Position (kb) 1684 1685Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1683.437 kb on - strand, within Shewana3_1451at 1683.548 kb on - strand, within Shewana3_1451at 1683.548 kb on - strand, within Shewana3_1451at 1683.712 kb on + strand, within Shewana3_1451at 1684.270 kb on - strand, within Shewana3_1452at 1684.335 kb on - strand, within Shewana3_1452at 1684.660 kb on - strand, within Shewana3_1452at 1684.686 kb on + strand, within Shewana3_1452at 1684.760 kb on - strand, within Shewana3_1452at 1684.996 kb on - strand, within Shewana3_1453at 1685.044 kb on + strand, within Shewana3_1453at 1685.046 kb on + strand, within Shewana3_1453at 1685.067 kb on + strand, within Shewana3_1453at 1685.148 kb on - strand, within Shewana3_1453at 1685.226 kb on + strand, within Shewana3_1453at 1685.226 kb on + strand, within Shewana3_1453at 1685.317 kb on + strand, within Shewana3_1453at 1685.595 kb on + strandat 1685.609 kb on - strandat 1685.701 kb on - strandat 1685.724 kb on - strand, within Shewana3_1454at 1685.762 kb on - strand, within Shewana3_1454at 1685.776 kb on - strand, within Shewana3_1454at 1685.778 kb on + strand, within Shewana3_1454at 1685.839 kb on - strand, within Shewana3_1454

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
remove
1,683,437 - Shewana3_1451 0.58 +0.8
1,683,548 - Shewana3_1451 0.66 -0.2
1,683,548 - Shewana3_1451 0.66 -2.4
1,683,712 + Shewana3_1451 0.77 -0.4
1,684,270 - Shewana3_1452 0.10 +0.1
1,684,335 - Shewana3_1452 0.19 -0.5
1,684,660 - Shewana3_1452 0.66 +0.5
1,684,686 + Shewana3_1452 0.69 -1.0
1,684,760 - Shewana3_1452 0.80 -3.3
1,684,996 - Shewana3_1453 0.18 +1.4
1,685,044 + Shewana3_1453 0.26 +1.4
1,685,046 + Shewana3_1453 0.27 +1.4
1,685,067 + Shewana3_1453 0.30 +0.0
1,685,148 - Shewana3_1453 0.45 +1.2
1,685,226 + Shewana3_1453 0.59 +1.0
1,685,226 + Shewana3_1453 0.59 +0.4
1,685,317 + Shewana3_1453 0.75 -0.3
1,685,595 + +1.2
1,685,609 - -0.7
1,685,701 - -0.9
1,685,724 - Shewana3_1454 0.10 +0.5
1,685,762 - Shewana3_1454 0.13 -2.0
1,685,776 - Shewana3_1454 0.13 -0.2
1,685,778 + Shewana3_1454 0.14 -1.3
1,685,839 - Shewana3_1454 0.17 +2.0

Or see this region's nucleotide sequence