Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1226

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1225 and Shewana3_1226 are separated by 144 nucleotidesShewana3_1226 and Shewana3_1227 are separated by 32 nucleotidesShewana3_1227 and Shewana3_1228 overlap by 4 nucleotides Shewana3_1225: Shewana3_1225 - hypothetical protein (RefSeq), at 1,428,213 to 1,429,304 _1225 Shewana3_1226: Shewana3_1226 - hypothetical protein (RefSeq), at 1,429,449 to 1,430,570 _1226 Shewana3_1227: Shewana3_1227 - type IV pilus biogenesis/stability protein PilW (RefSeq), at 1,430,603 to 1,431,391 _1227 Shewana3_1228: Shewana3_1228 - hypothetical protein (RefSeq), at 1,431,388 to 1,432,515 _1228 Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1428.805 kb on + strand, within Shewana3_1225at 1428.845 kb on - strand, within Shewana3_1225at 1428.944 kb on + strand, within Shewana3_1225at 1428.952 kb on - strand, within Shewana3_1225at 1429.108 kb on - strand, within Shewana3_1225at 1429.217 kb on + strandat 1429.225 kb on - strandat 1429.225 kb on - strandat 1429.227 kb on + strandat 1429.230 kb on - strandat 1429.273 kb on + strandat 1429.359 kb on + strandat 1429.373 kb on - strandat 1429.740 kb on - strand, within Shewana3_1226at 1429.796 kb on + strand, within Shewana3_1226at 1429.827 kb on + strand, within Shewana3_1226at 1430.022 kb on - strand, within Shewana3_1226at 1430.136 kb on - strand, within Shewana3_1226at 1430.224 kb on - strand, within Shewana3_1226at 1430.230 kb on - strand, within Shewana3_1226at 1430.278 kb on + strand, within Shewana3_1226at 1430.329 kb on + strand, within Shewana3_1226at 1430.329 kb on + strand, within Shewana3_1226at 1430.337 kb on - strand, within Shewana3_1226at 1430.821 kb on - strand, within Shewana3_1227at 1430.925 kb on - strand, within Shewana3_1227at 1431.499 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,428,805 + Shewana3_1225 0.54 +0.5
1,428,845 - Shewana3_1225 0.58 +1.2
1,428,944 + Shewana3_1225 0.67 +0.3
1,428,952 - Shewana3_1225 0.68 -1.0
1,429,108 - Shewana3_1225 0.82 -0.6
1,429,217 + +2.0
1,429,225 - -0.8
1,429,225 - -0.4
1,429,227 + -1.8
1,429,230 - -1.5
1,429,273 + +1.6
1,429,359 + -0.6
1,429,373 - -0.7
1,429,740 - Shewana3_1226 0.26 +1.4
1,429,796 + Shewana3_1226 0.31 -4.0
1,429,827 + Shewana3_1226 0.34 -4.5
1,430,022 - Shewana3_1226 0.51 +0.4
1,430,136 - Shewana3_1226 0.61 -2.7
1,430,224 - Shewana3_1226 0.69 -0.2
1,430,230 - Shewana3_1226 0.70 -0.2
1,430,278 + Shewana3_1226 0.74 -4.4
1,430,329 + Shewana3_1226 0.78 -4.4
1,430,329 + Shewana3_1226 0.78 -2.8
1,430,337 - Shewana3_1226 0.79 -1.4
1,430,821 - Shewana3_1227 0.28 +0.4
1,430,925 - Shewana3_1227 0.41 +0.4
1,431,499 + -0.2

Or see this region's nucleotide sequence